Variant report

Variant	rs12259717
Chromosome Location	chr10:25749684-25749685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10159703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828809	1.00[EUR][1000 genomes]
rs12249673	1.00[EUR][1000 genomes]
rs12267402	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59780253	1.00[EUR][1000 genomes]
rs7085469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608302	1.00[EUR][1000 genomes]
rs73610305	1.00[EUR][1000 genomes]
rs73610306	1.00[EUR][1000 genomes]
rs7907745	1.00[EUR][1000 genomes]
rs7907884	1.00[EUR][1000 genomes]
rs7912976	1.00[EUR][1000 genomes]
rs7915434	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25745200-25755000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25745400-25754600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:25746800-25754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:25749600-25750000	Weak transcription	Placenta	Placenta
5	chr10:25749600-25750200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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