Variant report

Variant	rs12259930
Chromosome Location	chr10:52601078-52601079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10994643	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10994668	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265892	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60228766	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742973	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908964	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52594800-52617200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:52596200-52601800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:52598000-52601800	Strong transcription	Liver	Liver
6	chr10:52598200-52622400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:52599400-52604000	Strong transcription	HepG2	liver
8	chr10:52600600-52601200	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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