Variant report

Variant	rs12260236
Chromosome Location	chr10:52589105-52589106
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10994625	1.00[AFR][1000 genomes]
rs10994639	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10994734	1.00[YRI][hapmap]
rs12250583	1.00[YRI][hapmap]
rs12258999	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259190	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259785	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262858	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73328714	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
2	chr10:52576800-52597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:52581600-52595800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52584800-52594000	Weak transcription	Pancreas	Pancrea
6	chr10:52585200-52593600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:52587800-52589400	Strong transcription	HepG2	liver
9	chr10:52588600-52589600	Strong transcription	Liver	Liver
10	chr10:52588800-52589600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:52589000-52592800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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