Variant report

Variant	rs1226176
Chromosome Location	chr1:92658454-92658455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1014415	1.00[JPT][hapmap]
rs10159094	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1023041	1.00[JPT][hapmap]
rs10747503	0.90[ASN][1000 genomes]
rs10875204	0.84[CEU][hapmap]
rs10875209	1.00[JPT][hapmap]
rs10875214	1.00[JPT][hapmap]
rs10875237	0.89[ASN][1000 genomes]
rs10875319	1.00[JPT][hapmap]
rs10875349	1.00[JPT][hapmap]
rs11164288	1.00[JPT][hapmap]
rs11165984	1.00[JPT][hapmap]
rs11166042	1.00[JPT][hapmap]
rs11166141	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs11166144	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1157469	0.82[CEU][hapmap]
rs1157470	1.00[JPT][hapmap]
rs11577572	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11585255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11588044	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11588153	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11589858	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12119246	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1226179	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1226183	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1226187	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12404806	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12406749	0.87[EUR][1000 genomes]
rs12407622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12724638	0.87[CEU][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12729867	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12734478	0.86[CEU][hapmap]
rs12740246	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12753920	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12755781	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12757533	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12759512	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384612	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384613	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1483022	0.86[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1487536	1.00[JPT][hapmap]
rs1487540	1.00[JPT][hapmap]
rs1542685	1.00[JPT][hapmap]
rs17519385	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17519972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17578686	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1872007	1.00[JPT][hapmap]
rs1982720	1.00[JPT][hapmap]
rs2046620	1.00[JPT][hapmap]
rs2069051	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087194	1.00[JPT][hapmap]
rs2093879	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs2128645	1.00[JPT][hapmap]
rs2128646	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2181897	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2391114	1.00[JPT][hapmap]
rs2839877	1.00[JPT][hapmap]
rs2893200	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs3103176	1.00[JPT][hapmap]
rs3103178	1.00[JPT][hapmap]
rs3103181	1.00[JPT][hapmap]
rs3118137	0.90[ASN][1000 genomes]
rs3131814	1.00[JPT][hapmap]
rs3131828	1.00[JPT][hapmap]
rs35015161	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3851271	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs3851272	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs3851273	1.00[JPT][hapmap]
rs4437922	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4658128	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs4658290	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs4658294	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4658298	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4658299	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4658300	1.00[JPT][hapmap]
rs488288	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs488849	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs490800	1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs492164	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs493595	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4949888	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs504606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs504613	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs506375	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs506377	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs507452	1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs511546	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs515280	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519343	0.89[ASN][1000 genomes]
rs519623	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs519932	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527412	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs529135	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs534547	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs539288	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544557	0.86[EUR][1000 genomes]
rs547699	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs551909	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs553861	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs556980	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560389	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563113	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs563606	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs564971	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs569178	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs569593	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570368	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573044	0.83[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs575805	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6603962	1.00[JPT][hapmap]
rs6604080	1.00[JPT][hapmap]
rs6604082	0.86[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6604090	1.00[JPT][hapmap]
rs6663278	1.00[JPT][hapmap]
rs6668803	1.00[JPT][hapmap]
rs6684317	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs6699855	1.00[JPT][hapmap]
rs6702267	1.00[JPT][hapmap]
rs7511656	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7511669	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7520275	1.00[JPT][hapmap]
rs7522081	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7529835	0.81[ASN][1000 genomes]
rs7533077	1.00[JPT][hapmap]
rs7537221	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541482	0.82[CEU][hapmap]
rs7542358	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs7542373	1.00[JPT][hapmap]
rs7545076	0.86[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs981583	0.88[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92642400-92662600	Weak transcription	NHDF-Ad	bronchial

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