Variant report

Variant	rs12265235
Chromosome Location	chr10:52857236-52857237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10218997	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10995567	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10995590	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247631	0.85[AMR][1000 genomes]
rs12253781	0.85[AMR][1000 genomes]
rs12264657	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339626	1.00[EUR][1000 genomes]
rs2339670	0.85[AMR][1000 genomes]
rs28438967	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2879545	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133958	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52850200-52863400	Weak transcription	NHLF	lung
3	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:52853200-52857600	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:52853200-52860000	Weak transcription	Fetal Lung	lung
6	chr10:52853400-52857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:52853800-52858200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:52855200-52866200	Weak transcription	Psoas Muscle	Psoas
9	chr10:52856000-52859200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:52856200-52858800	Enhancers	Aorta	Aorta
11	chr10:52856400-52861800	Weak transcription	Right Atrium	heart
12	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:52856800-52857400	Enhancers	Left Ventricle	heart
14	chr10:52856800-52857400	Enhancers	Ovary	ovary
15	chr10:52857000-52857400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:52857200-52857400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:52857200-52858200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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