Variant report

Variant	rs12269283
Chromosome Location	chr10:116883903-116883904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10466204	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10885652	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10885665	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197058	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197060	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197082	0.84[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197089	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197090	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197092	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197096	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197097	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197104	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197113	1.00[YRI][hapmap]
rs11197119	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11819446	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241864	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248846	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252039	0.93[YRI][hapmap]
rs12252344	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255157	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267097	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2197305	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7070442	0.83[AFR][1000 genomes]
rs7070487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074608	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7082007	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894112	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7897375	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7902966	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915481	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs7920152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920260	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv982865	chr10:116879604-116886328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116866000-116885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116878800-116884000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links