Variant report

Variant	rs12269851
Chromosome Location	chr11:35375681-35375682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35327322..35328895-chr11:35375252..35377771,2	MCF-7	breast:
2	chr11:35373926..35376824-chr11:35378507..35382009,3	MCF-7	breast:
3	chr11:35370125..35373303-chr11:35374872..35377145,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11033067	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033072	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11033077	0.98[ASN][1000 genomes]
rs11033092	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270176	1.00[EUR][1000 genomes]
rs12271412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12273257	1.00[GIH][hapmap]
rs12274991	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12276318	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12276739	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12281268	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12285197	1.00[EUR][1000 genomes]
rs12290877	1.00[EUR][1000 genomes]
rs12292131	1.00[GIH][hapmap]
rs12292906	1.00[ASN][1000 genomes]
rs16927309	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs16927393	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs2236274	1.00[EUR][1000 genomes]
rs3794085	1.00[EUR][1000 genomes]
rs3794092	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs4083482	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs7123447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124363	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124645	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926298	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:35368600-35379800	Weak transcription	Brain Anterior Caudate	brain
4	chr11:35370200-35380800	Weak transcription	Aorta	Aorta
5	chr11:35370200-35384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:35370600-35376400	Weak transcription	HepG2	liver
7	chr11:35371400-35377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:35371800-35376800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:35371800-35376800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:35372200-35376800	Weak transcription	Primary T cells from cord blood	blood
11	chr11:35372200-35376800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:35372400-35376800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:35372400-35376800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:35372600-35377200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:35372600-35377600	Enhancers	NHDF-Ad	bronchial
16	chr11:35372800-35376800	Weak transcription	GM12878-XiMat	blood
17	chr11:35372800-35377200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:35373000-35380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:35373400-35376400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:35373600-35376400	Weak transcription	HSMM	muscle
21	chr11:35374200-35376200	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:35374400-35375800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:35374400-35376000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:35374400-35376200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:35374400-35376200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:35374400-35376200	Weak transcription	Right Atrium	heart
27	chr11:35374400-35376200	Weak transcription	NH-A	brain
28	chr11:35374400-35376600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:35374400-35379000	Weak transcription	NHLF	lung
30	chr11:35374400-35379200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:35374400-35381400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:35374400-35381600	Weak transcription	Pancreas	Pancrea
33	chr11:35374400-35384600	Weak transcription	Psoas Muscle	Psoas
34	chr11:35374400-35384600	Weak transcription	Right Ventricle	heart
35	chr11:35374600-35376000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:35374600-35376000	Weak transcription	Osteobl	bone
37	chr11:35374600-35376200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:35374600-35379000	Weak transcription	Liver	Liver
39	chr11:35374600-35379400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:35375000-35376800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:35375000-35376800	Weak transcription	HMEC	breast
42	chr11:35375000-35383600	Weak transcription	Left Ventricle	heart
43	chr11:35375200-35379000	Weak transcription	Hela-S3	cervix

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