Variant report

Variant	rs12269870
Chromosome Location	chr11:33670000-33670001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10836086	1.00[AMR][1000 genomes]
rs11032328	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11032329	1.00[AMR][1000 genomes]
rs7121371	1.00[AMR][1000 genomes]
rs7125338	1.00[AMR][1000 genomes]
rs7938097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33640800-33673600	Weak transcription	Fetal Brain Male	brain
2	chr11:33642600-33673600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:33643000-33673600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:33656800-33673600	Weak transcription	NH-A	brain
5	chr11:33657400-33673600	Weak transcription	HSMMtube	muscle
6	chr11:33657800-33673600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:33657800-33688400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:33663400-33673600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:33664800-33670200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:33665400-33673000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:33665400-33673200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:33665600-33673400	Weak transcription	HSMM	muscle
13	chr11:33665800-33691600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:33666600-33673000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:33666800-33677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:33667600-33673200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:33667600-33679400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:33668000-33676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:33668000-33677400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:33668200-33672000	Weak transcription	Fetal Brain Female	brain
21	chr11:33668200-33673200	Weak transcription	Left Ventricle	heart
22	chr11:33668400-33673600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:33668400-33682400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:33668800-33670000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:33668800-33673000	Weak transcription	Adipose Nuclei	Adipose
26	chr11:33668800-33677000	Weak transcription	Brain Germinal Matrix	brain
27	chr11:33668800-33685200	Weak transcription	HUVEC	blood vessel
28	chr11:33669000-33670800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:33669000-33673200	Weak transcription	Right Atrium	heart
30	chr11:33669800-33670000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:33670000-33670400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:33670000-33670400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:33670000-33670800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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