Variant report

Variant	rs12270176
Chromosome Location	chr11:35328409-35328410
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35294659..35299259-chr11:35323739..35329418,10	MCF-7	breast:
2	chr11:35325082..35329028-chr11:35338650..35340551,3	MCF-7	breast:
3	chr11:35327935..35328765-chr4:72769646..72770565,2	MCF-7	breast:
4	chr11:35327322..35328895-chr11:35375252..35377771,2	MCF-7	breast:
5	chr11:35325412..35330750-chr11:35411649..35414159,5	MCF-7	breast:
6	chr11:35325471..35328883-chr11:35329361..35332564,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11033067	1.00[EUR][1000 genomes]
rs11033072	1.00[EUR][1000 genomes]
rs11033092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269851	1.00[EUR][1000 genomes]
rs12271412	1.00[EUR][1000 genomes]
rs12274991	1.00[EUR][1000 genomes]
rs12276318	1.00[EUR][1000 genomes]
rs12276739	1.00[EUR][1000 genomes]
rs12281268	1.00[EUR][1000 genomes]
rs12285197	1.00[EUR][1000 genomes]
rs12290877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2236274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3794085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123447	1.00[EUR][1000 genomes]
rs7124363	1.00[EUR][1000 genomes]
rs7124645	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:35314200-35329200	Weak transcription	Fetal Brain Male	brain
4	chr11:35324000-35336200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:35324400-35343200	Weak transcription	Gastric	stomach
6	chr11:35325200-35328600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:35325200-35339000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:35325600-35339200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:35327000-35333400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
11	chr11:35327200-35340600	Weak transcription	Brain Substantia Nigra	brain
12	chr11:35327400-35328600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:35327400-35329400	Strong transcription	HepG2	liver
14	chr11:35327400-35329800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:35327400-35339000	Weak transcription	Aorta	Aorta
16	chr11:35327600-35328600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:35327600-35329200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:35327600-35329200	Weak transcription	Primary B cells from cord blood	blood
19	chr11:35327600-35330800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:35327600-35335200	Weak transcription	Esophagus	oesophagus
21	chr11:35327600-35336600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:35327600-35337400	Weak transcription	NHDF-Ad	bronchial
23	chr11:35327800-35328600	Weak transcription	Liver	Liver
24	chr11:35327800-35328800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:35327800-35328800	Weak transcription	Fetal Brain Female	brain
26	chr11:35327800-35329000	Weak transcription	Brain Anterior Caudate	brain
27	chr11:35327800-35329000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr11:35327800-35329200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:35327800-35329200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:35327800-35329400	Weak transcription	Placenta	Placenta
31	chr11:35327800-35330800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:35327800-35332200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:35327800-35333000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:35327800-35333200	Weak transcription	GM12878-XiMat	blood
35	chr11:35327800-35334800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:35327800-35334800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:35327800-35334800	Weak transcription	Pancreas	Pancrea
38	chr11:35327800-35335000	Weak transcription	Brain Germinal Matrix	brain
39	chr11:35327800-35335200	Weak transcription	Left Ventricle	heart
40	chr11:35327800-35335200	Weak transcription	Spleen	Spleen
41	chr11:35327800-35340400	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:35327800-35340800	Weak transcription	NHLF	lung
43	chr11:35328400-35329400	Enhancers	Skeletal Muscle Male	skeletal muscle

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