Variant report

Variant	rs12270774
Chromosome Location	chr11:72146906-72146907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11235471	1.00[EUR][1000 genomes]
rs11235481	1.00[EUR][1000 genomes]
rs11235497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11235517	1.00[EUR][1000 genomes]
rs11235542	1.00[EUR][1000 genomes]
rs12273286	1.00[EUR][1000 genomes]
rs12274817	1.00[EUR][1000 genomes]
rs12285652	1.00[EUR][1000 genomes]
rs12290945	1.00[EUR][1000 genomes]
rs12291899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72145600-72147000	Weak transcription	GM12878-XiMat	blood
2	chr11:72145600-72149600	Weak transcription	NHDF-Ad	bronchial
3	chr11:72145600-72150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:72145600-72152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:72145600-72152600	Weak transcription	Right Atrium	heart
6	chr11:72145800-72147600	Weak transcription	Primary B cells from cord blood	blood
7	chr11:72145800-72148800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:72145800-72149000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:72145800-72149600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:72145800-72150200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:72145800-72150200	Weak transcription	HMEC	breast
12	chr11:72145800-72150400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:72146000-72149200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:72146000-72150200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:72146000-72150200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:72146000-72152000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:72146200-72150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:72146600-72148000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:72146800-72151200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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