Variant report

Variant	rs1227159
Chromosome Location	chr7:112385464-112385465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112380654..112382930-chr7:112384720..112386358,2	K562	blood:
2	chr7:112383614..112385852-chr7:112389748..112391576,2	K562	blood:
3	chr7:112384010..112386200-chr7:112388223..112390275,2	MCF-7	breast:
4	chr7:112384486..112386062-chr7:112388133..112390075,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10249701	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10269793	1.00[ASN][1000 genomes]
rs10271752	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10273589	1.00[ASN][1000 genomes]
rs1227155	1.00[ASN][1000 genomes]
rs1227158	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227163	1.00[ASN][1000 genomes]
rs1227168	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1227171	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1227172	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1227174	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1227176	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1227177	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1227178	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1227181	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1227183	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1227190	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1238698	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1615468	0.81[EUR][1000 genomes]
rs1718955	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1718957	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1718961	0.81[ASN][1000 genomes]
rs1718969	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1796491	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1796492	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1796493	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1796512	0.81[ASN][1000 genomes]
rs1796516	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2457	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2708295	0.81[ASN][1000 genomes]
rs2708296	0.81[ASN][1000 genomes]
rs6466421	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6946335	0.82[EUR][1000 genomes]
rs6948876	1.00[ASN][1000 genomes]
rs6955834	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7777973	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7778135	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7789772	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7803405	0.90[ASN][1000 genomes]
rs9649356	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112384600-112386600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
4	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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