Variant report

Variant	rs12272214
Chromosome Location	chr11:47665440-47665441
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:47662559-47665501	Hela-S3	cervix:	n/a	n/a
2	ESRRA	chr11:47663492-47665556	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47665176..47668139-chr11:47670216..47674244,3	MCF-7	breast:
2	chr11:47663509..47666496-chr11:47787150..47790595,4	MCF-7	breast:
3	chr11:47663756..47666703-chr11:47730078..47732549,2	MCF-7	breast:
4	chr11:47572750..47576231-chr11:47662956..47665605,3	K562	blood:
5	chr11:47662583..47667763-chr11:47735291..47739208,6	MCF-7	breast:
6	chr11:47662615..47665881-chr11:47786940..47791485,8	K562	blood:
7	chr11:47662579..47666117-chr11:47735408..47738256,8	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
MTCH2	TF binding region
ENSG00000165923	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000109920	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11039250	1.00[AMR][1000 genomes]
rs11039259	1.00[AMR][1000 genomes]
rs11039261	1.00[AMR][1000 genomes]
rs11039298	1.00[AMR][1000 genomes]
rs11039349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039363	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039388	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039424	0.88[AFR][1000 genomes]
rs11039435	0.88[AFR][1000 genomes]
rs12270098	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271179	1.00[AMR][1000 genomes]
rs12271799	0.88[AFR][1000 genomes]
rs12275286	1.00[AMR][1000 genomes]
rs12282406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283198	1.00[AMR][1000 genomes]
rs12284196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286933	1.00[AMR][1000 genomes]
rs12288253	1.00[AMR][1000 genomes]
rs12289434	1.00[AMR][1000 genomes]
rs13377558	0.80[AFR][1000 genomes]
rs13377591	1.00[AMR][1000 genomes]
rs61978569	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47665000-47670000	Weak transcription	Fetal Brain Male	brain
2	chr11:47665000-47672400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:47665200-47666400	Weak transcription	Hela-S3	cervix
4	chr11:47665200-47672600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:47665400-47665600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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