Variant report

Variant	rs12272506
Chromosome Location	chr11:76259892-76259893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11236760	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11236768	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11236769	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283862	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12284254	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1848387	chr11:76243699-76262652	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76224400-76262600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:76224400-76263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:76230000-76265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:76233800-76260200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:76233800-76262000	Strong transcription	Placenta	Placenta
6	chr11:76233800-76262400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:76233800-76262600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:76233800-76263200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:76234000-76262600	Strong transcription	Dnd41	blood
10	chr11:76234200-76262000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:76234800-76263000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:76236400-76261800	Weak transcription	Stomach Mucosa	stomach
13	chr11:76237400-76261200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:76239000-76261600	Strong transcription	Liver	Liver
15	chr11:76239600-76262000	Strong transcription	Primary T cells from cord blood	blood
16	chr11:76239600-76262200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:76246600-76260600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:76248200-76261400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:76248400-76261600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:76251600-76260400	Strong transcription	Fetal Lung	lung
21	chr11:76252000-76262000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr11:76252000-76262600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:76252200-76260600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:76252600-76261800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:76252600-76263000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:76252800-76261600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:76252800-76262000	Strong transcription	Fetal Brain Female	brain
28	chr11:76254800-76265800	Weak transcription	Fetal Heart	heart
29	chr11:76254800-76269800	Weak transcription	NHDF-Ad	bronchial
30	chr11:76255200-76265200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:76255400-76261400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:76255600-76260600	Strong transcription	HSMM	muscle
33	chr11:76255800-76263200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:76256000-76261600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr11:76256000-76264800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:76256000-76265400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:76256000-76266400	Weak transcription	A549	lung
38	chr11:76256000-76273400	Weak transcription	Psoas Muscle	Psoas
39	chr11:76256200-76265800	Weak transcription	Colonic Mucosa	Colon
40	chr11:76256200-76265800	Weak transcription	Fetal Brain Male	brain
41	chr11:76257200-76260200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:76257200-76260600	Weak transcription	K562	blood
43	chr11:76257200-76266400	Weak transcription	Brain Angular Gyrus	brain
44	chr11:76257200-76266600	Weak transcription	Small Intestine	intestine
45	chr11:76257200-76270200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:76257200-76272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:76257400-76260000	Weak transcription	Aorta	Aorta
48	chr11:76257400-76260200	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:76257400-76261000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:76257400-76261000	Weak transcription	Gastric	stomach

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