Variant report

Variant	rs12273644
Chromosome Location	chr11:35340660-35340661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35339447..35341142-chr11:35384783..35386762,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10836372	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836376	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs10836377	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs10836378	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs11033073	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11033079	0.93[EUR][1000 genomes]
rs11033086	0.87[EUR][1000 genomes]
rs11033087	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs1885343	0.84[EUR][1000 genomes]
rs3794086	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs3847619	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs4756209	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4756212	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs4756214	0.95[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs6484778	0.81[CHB][hapmap]
rs7110985	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7939421	0.93[EUR][1000 genomes]
rs7942395	0.95[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs7942586	0.94[EUR][1000 genomes]
rs7942698	0.91[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324400-35343200	Weak transcription	Gastric	stomach
2	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
3	chr11:35327800-35340800	Weak transcription	NHLF	lung
4	chr11:35329600-35340800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:35330000-35340800	Weak transcription	Fetal Brain Male	brain
6	chr11:35332000-35343800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:35332400-35340800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:35335600-35340800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:35335600-35341800	Weak transcription	Brain Anterior Caudate	brain
10	chr11:35335600-35342800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:35335600-35343200	Weak transcription	Left Ventricle	heart
12	chr11:35335600-35343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:35337800-35341400	Enhancers	GM12878-XiMat	blood
14	chr11:35338000-35341400	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:35338000-35342400	Weak transcription	HSMM	muscle
16	chr11:35338000-35343000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:35338200-35341000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:35338200-35343400	Weak transcription	Osteobl	bone
19	chr11:35338600-35343200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:35338800-35340800	Weak transcription	Fetal Brain Female	brain
21	chr11:35338800-35341400	Enhancers	Primary B cells from cord blood	blood
22	chr11:35339000-35341800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:35339000-35343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:35339000-35358000	Weak transcription	HepG2	liver
25	chr11:35339200-35344200	Weak transcription	Psoas Muscle	Psoas
26	chr11:35339600-35341400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr11:35339800-35341400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:35339800-35342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:35340000-35341200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr11:35340000-35341200	Enhancers	Aorta	Aorta
31	chr11:35340000-35341400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:35340000-35341400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr11:35340000-35341400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr11:35340000-35341600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:35340000-35342200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr11:35340200-35341400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr11:35340400-35340800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:35340400-35341000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:35340400-35341000	Enhancers	Brain Hippocampus Middle	brain
40	chr11:35340400-35341200	Enhancers	Stomach Smooth Muscle	stomach
41	chr11:35340400-35341400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:35340400-35342000	Enhancers	Primary T cells from cord blood	blood
43	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
44	chr11:35340600-35340800	Enhancers	Adipose Nuclei	Adipose
45	chr11:35340600-35341000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:35340600-35341000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:35340600-35341000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:35340600-35341200	Enhancers	Right Atrium	heart
49	chr11:35340600-35341200	Enhancers	NH-A	brain
50	chr11:35340600-35341400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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