Variant report

Variant	rs12274817
Chromosome Location	chr11:72132862-72132863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72132612..72135031-chr11:72143340..72145172,3	MCF-7	breast:
2	chr11:72131141..72133855-chr11:72136950..72138504,2	K562	blood:
3	chr11:72127826..72130602-chr11:72132748..72136507,3	MCF-7	breast:
4	chr11:72131141..72135165-chr11:72135954..72138566,4	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11235471	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11235481	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11235498	1.00[EUR][1000 genomes]
rs11235517	1.00[EUR][1000 genomes]
rs11235542	1.00[EUR][1000 genomes]
rs12270774	1.00[EUR][1000 genomes]
rs12273286	1.00[EUR][1000 genomes]
rs12285652	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12290945	1.00[EUR][1000 genomes]
rs12291899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
2	chr11:72106800-72136800	Weak transcription	NHLF	lung
3	chr11:72109600-72137000	Weak transcription	Osteobl	bone
4	chr11:72109800-72139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:72110000-72134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:72110600-72139000	Weak transcription	Colonic Mucosa	Colon
7	chr11:72111800-72138400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:72114000-72138000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:72114200-72138600	Weak transcription	Ovary	ovary
10	chr11:72115200-72136600	Weak transcription	Aorta	Aorta
11	chr11:72123400-72134200	Weak transcription	Fetal Lung	lung
12	chr11:72123400-72136000	Weak transcription	Brain Germinal Matrix	brain
13	chr11:72123400-72136200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:72123400-72136600	Weak transcription	Spleen	Spleen
15	chr11:72123400-72136800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:72123600-72136600	Weak transcription	Fetal Brain Male	brain
17	chr11:72125400-72136200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:72125400-72137400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:72125400-72138800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:72125400-72139200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:72125400-72141600	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:72125400-72141800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:72125400-72142000	Weak transcription	HSMM	muscle
24	chr11:72125600-72136000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:72125600-72136600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:72125800-72133600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:72125800-72134200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:72125800-72135200	Weak transcription	Fetal Stomach	stomach
29	chr11:72125800-72136600	Weak transcription	Fetal Intestine Small	intestine
30	chr11:72125800-72137000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:72125800-72137800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:72125800-72138000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:72125800-72138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:72125800-72138800	Weak transcription	Gastric	stomach
35	chr11:72125800-72139200	Weak transcription	NH-A	brain
36	chr11:72125800-72139400	Weak transcription	Fetal Intestine Large	intestine
37	chr11:72125800-72139600	Weak transcription	HSMMtube	muscle
38	chr11:72125800-72144800	Weak transcription	Fetal Kidney	kidney
39	chr11:72126000-72133400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:72126000-72133600	Weak transcription	K562	blood
41	chr11:72126000-72136000	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:72126000-72136600	Weak transcription	Pancreas	Pancrea
43	chr11:72126000-72138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:72126000-72138400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:72128400-72135200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr11:72129200-72136000	Weak transcription	Right Atrium	heart
47	chr11:72129400-72133400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:72129400-72133600	Weak transcription	Liver	Liver
49	chr11:72129400-72135400	Weak transcription	Left Ventricle	heart
50	chr11:72129400-72136000	Weak transcription	Adipose Nuclei	Adipose

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