Variant report

Variant	rs12275544
Chromosome Location	chr11:35341840-35341841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35316062..35317764-chr11:35341517..35344402,2	MCF-7	breast:
2	chr11:35338073..35340273-chr11:35341341..35343774,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10671102	1.00[AMR][1000 genomes]
rs11033078	0.81[AFR][1000 genomes]
rs11033088	0.82[YRI][hapmap]
rs12274790	0.82[YRI][hapmap]
rs12279038	0.87[AFR][1000 genomes]
rs12281679	1.00[AMR][1000 genomes]
rs3915513	0.80[AFR][1000 genomes]
rs61618750	1.00[AMR][1000 genomes]
rs7122176	1.00[AMR][1000 genomes]
rs7127728	0.82[YRI][hapmap]
rs7131582	1.00[AMR][1000 genomes]
rs7938147	1.00[AMR][1000 genomes]
rs7938263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324400-35343200	Weak transcription	Gastric	stomach
2	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
3	chr11:35332000-35343800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:35335600-35342800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:35335600-35343200	Weak transcription	Left Ventricle	heart
6	chr11:35335600-35343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:35338000-35342400	Weak transcription	HSMM	muscle
8	chr11:35338000-35343000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:35338200-35343400	Weak transcription	Osteobl	bone
10	chr11:35338600-35343200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:35339000-35343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:35339000-35358000	Weak transcription	HepG2	liver
13	chr11:35339200-35344200	Weak transcription	Psoas Muscle	Psoas
14	chr11:35339800-35342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:35340000-35342200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:35340400-35342000	Enhancers	Primary T cells from cord blood	blood
17	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
18	chr11:35340600-35342400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:35340600-35342400	Enhancers	Brain Substantia Nigra	brain
20	chr11:35340600-35344800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:35340600-35345800	Enhancers	Pancreas	Pancrea
22	chr11:35340600-35347600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:35340800-35342200	Enhancers	HSMMtube	muscle
24	chr11:35340800-35342800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:35340800-35344800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:35341000-35342000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:35341000-35342200	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:35341000-35343400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:35341000-35344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:35341200-35343200	Weak transcription	Fetal Brain Male	brain
31	chr11:35341200-35343200	Weak transcription	NH-A	brain
32	chr11:35341200-35343200	Weak transcription	NHLF	lung
33	chr11:35341200-35343400	Weak transcription	Right Atrium	heart
34	chr11:35341200-35344000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:35341200-35344400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:35341200-35351200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:35341200-35351400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:35341400-35343600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:35341400-35343600	Weak transcription	GM12878-XiMat	blood
40	chr11:35341400-35346200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:35341400-35349400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:35341400-35350200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:35341400-35351400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:35341600-35342000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr11:35341600-35342000	Weak transcription	Brain Angular Gyrus	brain
46	chr11:35341800-35342000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:35341800-35342000	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr11:35341800-35342000	Enhancers	Fetal Brain Female	brain
49	chr11:35341800-35342400	Enhancers	Brain Anterior Caudate	brain
50	chr11:35341800-35344800	Enhancers	Brain Germinal Matrix	brain

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