Variant report

Variant	rs12277006
Chromosome Location	chr11:46870322-46870323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46869890..46871756-chr11:46897945..46899675,2	K562	blood:
2	chr11:46866643..46869468-chr11:46869664..46873385,6	MCF-7	breast:
3	chr11:46867869..46870571-chr11:46894763..46897739,3	K562	blood:

Variant related genes	Relation type
ENSG00000134569	Chromatin interaction
ENSG00000175216	Chromatin interaction
ENSG00000247675	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10466476	0.86[CEU][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.88[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.88[CEU][hapmap];0.96[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	1.00[ASN][1000 genomes]
rs11822959	0.80[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	0.87[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	0.88[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136478	0.96[YRI][hapmap]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136485	0.93[YRI][hapmap]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	0.88[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	0.82[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	0.88[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs59197251	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.88[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.88[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7108147	0.86[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.85[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	1.00[CEU][hapmap]
rs7115986	0.88[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122604	0.91[LWK][hapmap];0.96[MKK][hapmap]
rs7123729	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.86[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868200-46872400	Weak transcription	Esophagus	oesophagus
3	chr11:46868200-46879600	Weak transcription	Left Ventricle	heart
4	chr11:46868200-46880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:46868400-46875200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:46868400-46875200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:46868400-46876000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:46868400-46876600	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:46868400-46877200	Weak transcription	Brain Anterior Caudate	brain
10	chr11:46868400-46877400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:46868400-46878600	Weak transcription	HSMMtube	muscle
12	chr11:46868400-46878800	Weak transcription	Right Ventricle	heart
13	chr11:46868400-46879200	Weak transcription	Fetal Kidney	kidney
14	chr11:46868400-46879400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:46868400-46879600	Weak transcription	Fetal Intestine Large	intestine
16	chr11:46868400-46879800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:46868400-46880200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:46868400-46880400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:46868400-46884200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:46868600-46870400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:46868600-46871200	Weak transcription	K562	blood
22	chr11:46868600-46874200	Weak transcription	Ovary	ovary
23	chr11:46868600-46876600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:46868600-46877000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:46868600-46877200	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:46868600-46877400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:46868600-46877600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:46868600-46877800	Weak transcription	Fetal Stomach	stomach
29	chr11:46868600-46878400	Weak transcription	Fetal Lung	lung
30	chr11:46868600-46879200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:46868600-46879200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:46868600-46879400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:46868600-46879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:46868600-46879800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:46868600-46879800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:46868600-46879800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:46868600-46879800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:46868600-46880000	Weak transcription	Brain Angular Gyrus	brain
39	chr11:46868600-46880000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:46868600-46880000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:46868600-46885400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:46868600-46894400	Weak transcription	HMEC	breast
43	chr11:46868600-46895200	Weak transcription	Fetal Heart	heart
44	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
45	chr11:46868800-46875200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:46868800-46878000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:46868800-46879600	Weak transcription	Fetal Brain Female	brain
48	chr11:46868800-46879800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:46868800-46884200	Weak transcription	NHEK	skin
50	chr11:46868800-46913000	Weak transcription	A549	lung

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