Variant report

Variant	rs12277890
Chromosome Location	chr11:56274176-56274177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10501352	0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs11228707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228713	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12276015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12577186	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577887	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12785840	0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs12788990	0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs17543683	0.90[ASN][1000 genomes]
rs17543899	0.90[ASN][1000 genomes]
rs55828445	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72913740	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv3390825	chr11:56267582-56279687	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
6	esv3517447	chr11:56267639-56279771	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
7	esv3517448	chr11:56267639-56279771	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
8	nsv975185	chr11:56268021-56280681	Enhancers Weak transcription	TF binding region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links