Variant report

Variant	rs12279033
Chromosome Location	chr11:67572992-67572993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr11:67572450-67573869	A549	lung:	n/a	chr11:67573294-67573303 chr11:67573177-67573186 chr11:67573598-67573607 chr11:67573764-67573778 chr11:67573407-67573419 chr11:67573070-67573079 chr11:67572788-67572798 chr11:67573293-67573305 chr11:67573071-67573080 chr11:67572787-67572799 chr11:67573767-67573779 chr11:67573359-67573371 chr11:67573736-67573746 chr11:67573304-67573316 chr11:67573152-67573166 chr11:67573388-67573397 chr11:67572787-67572799 chr11:67573768-67573777 chr11:67573455-67573469 chr11:67573711-67573720 chr11:67573175-67573187 chr11:67573767-67573779 chr11:67573071-67573080 chr11:67572788-67572798 chr11:67573408-67573417 chr11:67573555-67573564 chr11:67573069-67573081 chr11:67572788-67572797 chr11:67573069-67573081 chr11:67573172-67573186 chr11:67573769-67573778 chr11:67573293-67573305 chr11:67573458-67573470 chr11:67573295-67573304 chr11:67573070-67573080 chr11:67573290-67573304 chr11:67573404-67573418 chr11:67573386-67573398 chr11:67573386-67573398 chr11:67573709-67573721 chr11:67573306-67573315 chr11:67573409-67573418 chr11:67573176-67573185 chr11:67573258-67573267 chr11:67573069-67573080 chr11:67573304-67573316 chr11:67572789-67572798 chr11:67573737-67573746 chr11:67573709-67573721
2	POLR2A	chr11:67572034-67573691	Hela-S3	cervix:	n/a	n/a
3	FOSL2	chr11:67571840-67574401	HepG2	liver:	n/a	chr11:67572039-67572050 chr11:67573507-67573516 chr11:67572040-67572048 chr11:67573767-67573776 chr11:67573407-67573416 chr11:67572038-67572050
4	PAX5	chr11:67571768-67574406	GM12878	blood:	n/a	chr11:67573761-67573780 chr11:67573052-67573070
5	POLR2A	chr11:67572932-67573162	A549	lung:	n/a	n/a
6	POLR2A	chr11:67572418-67573719	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3AK20	chr11:67572873-67574291	HepG2	liver:	n/a	n/a
8	SP1	chr11:67572597-67573570	H1-hESC	embryonic stem cell:	n/a	chr11:67573294-67573303 chr11:67573177-67573186 chr11:67573407-67573419 chr11:67573070-67573079 chr11:67572788-67572798 chr11:67573293-67573305 chr11:67573071-67573080 chr11:67572787-67572799 chr11:67573359-67573371 chr11:67573304-67573316 chr11:67573152-67573166 chr11:67573388-67573397 chr11:67572787-67572799 chr11:67573455-67573469 chr11:67573175-67573187 chr11:67573071-67573080 chr11:67572788-67572798 chr11:67573408-67573417 chr11:67573555-67573564 chr11:67573069-67573081 chr11:67572788-67572797 chr11:67573069-67573081 chr11:67573172-67573186 chr11:67573293-67573305 chr11:67573458-67573470 chr11:67573295-67573304 chr11:67573070-67573080 chr11:67573290-67573304 chr11:67573404-67573418 chr11:67573386-67573398 chr11:67573386-67573398 chr11:67573306-67573315 chr11:67573409-67573418 chr11:67573176-67573185 chr11:67573258-67573267 chr11:67573069-67573080 chr11:67573304-67573316 chr11:67572789-67572798
9	POLR2A	chr11:67572927-67573238	HepG2	liver:	n/a	n/a
10	POLR2A	chr11:67572046-67573163	Raji	blood:	n/a	n/a
11	ELF1	chr11:67572956-67573635	GM12878	blood:	n/a	n/a
12	CTCF	chr11:67572968-67573129	Lung_OC	lung:	n/a	n/a
13	PAX5	chr11:67572885-67573353	GM12878	blood:	n/a	chr11:67573052-67573070
14	E2F4	chr11:67572953-67573571	MCF10A-Er-Src	breast:	n/a	chr11:67573298-67573308 chr11:67573408-67573417 chr11:67573074-67573084 chr11:67573294-67573303 chr11:67573176-67573185
15	CREB1	chr11:67572871-67573238	HepG2	liver:	n/a	n/a
16	CREB1	chr11:67572545-67573548	A549	lung:	n/a	n/a
17	HEY1	chr11:67571894-67574865	HepG2	liver:	n/a	chr11:67572591-67572606 chr11:67572568-67572583 chr11:67573300-67573315 chr11:67572501-67572516
18	STAT1	chr11:67572956-67573564	GM12878	blood:	n/a	n/a
19	RFX5	chr11:67572687-67573439	Hela-S3	cervix:	n/a	chr11:67572804-67572818
20	ELF1	chr11:67572483-67573483	K562	blood:	n/a	n/a
21	PAX5	chr11:67572875-67574022	GM12878	blood:	n/a	chr11:67573761-67573780 chr11:67573052-67573070
22	POLR2A	chr11:67572552-67573177	GM19193	blood:	n/a	n/a
23	POLR2A	chr11:67571895-67573269	GM12892	blood:	n/a	n/a
24	TCF3	chr11:67572023-67573183	GM12878	blood:	n/a	n/a
25	POLR2A	chr11:67571959-67573568	MCF10A-Er-Src	breast:	n/a	n/a
26	POLR2A	chr11:67570846-67574276	H1-hESC	embryonic stem cell:	n/a	n/a
27	FOXA2	chr11:67572461-67573036	A549	lung:	n/a	n/a
28	TAF1	chr11:67571910-67573342	H1-hESC	embryonic stem cell:	n/a	n/a
29	EBF1	chr11:67571554-67573225	GM12878	blood:	n/a	chr11:67572157-67572168 chr11:67572159-67572168 chr11:67572158-67572168 chr11:67572159-67572168 chr11:67572157-67572170
30	IRF1	chr11:67572698-67573498	K562	blood:	n/a	chr11:67573175-67573189 chr11:67573407-67573421 chr11:67573359-67573373 chr11:67573444-67573458 chr11:67573458-67573472 chr11:67572787-67572801 chr11:67573293-67573307 chr11:67573069-67573083
31	EGR1	chr11:67572584-67573179	K562	blood:	n/a	chr11:67573145-67573167 chr11:67572675-67572685 chr11:67573154-67573164 chr11:67572788-67572798 chr11:67572784-67572798 chr11:67572786-67572795
32	FOXP2	chr11:67572654-67573591	PFSK-1	brain:	n/a	n/a
33	USF1	chr11:67572450-67573795	A549	lung:	n/a	n/a
34	PBX3	chr11:67572920-67573413	GM12878	blood:	n/a	n/a
35	USF1	chr11:67572869-67573892	HepG2	liver:	n/a	n/a
36	GABPA	chr11:67572573-67573517	Hela-S3	cervix:	n/a	chr11:67572788-67572797
37	MAX	chr11:67571960-67573002	Hela-S3	cervix:	n/a	chr11:67572131-67572140 chr11:67572785-67572794 chr11:67572586-67572595 chr11:67572585-67572596 chr11:67572040-67572049 chr11:67572788-67572798
38	ZNF143	chr11:67572647-67573567	GM12878	blood:	n/a	chr11:67573451-67573469 chr11:67573352-67573370
39	CHD2	chr11:67572445-67573568	Hela-S3	cervix:	n/a	chr11:67572669-67572679
40	POLR2A	chr11:67572381-67573069	U87	brain:	n/a	n/a
41	CBX3	chr11:67572540-67573426	K562	blood:	n/a	n/a
42	FOXP2	chr11:67572619-67573632	SK-N-MC	brain:	n/a	n/a
43	SP1	chr11:67572638-67574212	GM12878	blood:	n/a	chr11:67573294-67573303 chr11:67573177-67573186 chr11:67573598-67573607 chr11:67573764-67573778 chr11:67573407-67573419 chr11:67573070-67573079 chr11:67572788-67572798 chr11:67573293-67573305 chr11:67573071-67573080 chr11:67572787-67572799 chr11:67573767-67573779 chr11:67573359-67573371 chr11:67573736-67573746 chr11:67573304-67573316 chr11:67573152-67573166 chr11:67573388-67573397 chr11:67572787-67572799 chr11:67573768-67573777 chr11:67573455-67573469 chr11:67573711-67573720 chr11:67573175-67573187 chr11:67573767-67573779 chr11:67573071-67573080 chr11:67572788-67572798 chr11:67573408-67573417 chr11:67573555-67573564 chr11:67573069-67573081 chr11:67572788-67572797 chr11:67573069-67573081 chr11:67573172-67573186 chr11:67573769-67573778 chr11:67573293-67573305 chr11:67573458-67573470 chr11:67573295-67573304 chr11:67573070-67573080 chr11:67573290-67573304 chr11:67573404-67573418 chr11:67573386-67573398 chr11:67573386-67573398 chr11:67573709-67573721 chr11:67573306-67573315 chr11:67573409-67573418 chr11:67573176-67573185 chr11:67573258-67573267 chr11:67573069-67573080 chr11:67573304-67573316 chr11:67572789-67572798 chr11:67573737-67573746 chr11:67573709-67573721
44	POLR2A	chr11:67570250-67574370	Hela-S3	cervix:	n/a	n/a
45	MAX	chr11:67571952-67573557	K562	blood:	n/a	chr11:67573328-67573341 chr11:67573329-67573340 chr11:67572131-67572140 chr11:67573328-67573338 chr11:67573330-67573339 chr11:67573328-67573343 chr11:67572785-67572794 chr11:67572586-67572595 chr11:67573331-67573338 chr11:67573330-67573339 chr11:67572585-67572596 chr11:67573329-67573340 chr11:67573330-67573340 chr11:67572040-67572049 chr11:67573329-67573339 chr11:67572788-67572798
46	POLR2A	chr11:67572461-67573242	NB4	blood:	n/a	n/a
47	ATF1	chr11:67572955-67573090	K562	blood:	n/a	n/a
48	JUND	chr11:67572863-67573118	HepG2	liver:	n/a	n/a
49	SP4	chr11:67572533-67573469	H1-hESC	embryonic stem cell:	n/a	chr11:67573067-67573083 chr11:67572785-67572801 chr11:67573069-67573080 chr11:67573291-67573307
50	POLR2A	chr11:67572883-67573913	Hela-S3	cervix:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:67572988-67573038	HRPEpiC	eye:	n/a
2	chr11:67572988-67573038	HCT-116	colon:	n/a
3	chr11:67572988-67573038	NH-A	brain:	n/a
4	chr11:67572988-67573038	AoSMC	blood vessel:	n/a
5	chr11:67572988-67573038	HCF	heart:	n/a
6	chr11:67572988-67573038	GM19239	blood:	n/a
7	chr11:67572988-67573038	AG09319	gingival:	n/a
8	chr11:67572988-67573038	HUVEC	blood vessel:	n/a
9	chr11:67572988-67573038	T-47D	breast:	n/a
10	chr11:67572988-67573038	SK-N-MC	brain:	n/a
11	chr11:67572988-67573038	HPAEpiC	pulmonary alveolar:	n/a
12	chr11:67572988-67573038	HMEC	breast:	n/a
13	chr11:67572988-67573038	HEEpiC	esophagus:	n/a
14	chr11:67572988-67573038	SK-N-SH_RA	brain:	n/a
15	chr11:67572988-67573038	H1-hESC	embryonic stem cell:	embryo
16	chr11:67572988-67573038	PFSK-1	brain:	n/a
17	chr11:67572988-67573038	Hela-S3	cervix:	n/a
18	chr11:67572988-67573038	ProgFib	skin:	n/a
19	chr11:67572988-67573038	GM12892	blood:	n/a
20	chr11:67572988-67573038	HCPEpiC	choroid plexus:	n/a
21	chr11:67572988-67573038	NT2-D1	testis:	n/a
22	chr11:67572988-67573038	SKMC	muscle:	n/a
23	chr11:67572988-67573038	SK-N-SH	brain:	n/a
24	chr11:67572988-67573038	GM12891	blood:	n/a
25	chr11:67572988-67573038	HCM	heart:	n/a
26	chr11:67572988-67573038	AG09309	skin:	n/a
27	chr11:67572988-67573038	HIPEpiC	eye:	n/a
28	chr11:67572988-67573038	NHBE	bronchial:	n/a
29	chr11:67572988-67573038	PANC-1	pancreas:	n/a
30	chr11:67572988-67573038	HL-60	blood:	n/a
31	chr11:67572988-67573038	BJ	skin:	n/a
32	chr11:67572988-67573038	Caco-2	colon:	n/a
33	chr11:67572988-67573038	MCF-7	breast:	n/a
34	chr11:67572988-67573038	Jurkat	blood:	n/a
35	chr11:67572988-67573038	LNCaP	prostate:	n/a
36	chr11:67572988-67573038	HNPCEpiC	eye:	n/a
37	chr11:67572988-67573038	U87	brain:	n/a
38	chr11:67572988-67573038	HRE	kidney:	n/a
39	chr11:67572988-67573038	CMK	blood:	n/a
40	chr11:67572988-67573038	SAEC	small airway:	n/a
41	chr11:67572988-67573038	AG10803	skin:	n/a
42	chr11:67572988-67573038	RPTEC	kidney:	n/a
43	chr11:67572988-67573038	MCF10A-Er-Src	breast:	n/a
44	chr11:67572988-67573038	NB4	blood:	n/a
45	chr11:67572988-67573038	GM06990	blood:	n/a
46	chr11:67572988-67573038	Hepatocyte	liver:	n/a
47	chr11:67572988-67573038	HAEpiC	amniotic membrane:	n/a
48	chr11:67572988-67573038	PrEC	prostate:	n/a
49	chr11:67572988-67573038	HepG2	liver:	n/a
50	chr11:67572988-67573038	GM12878	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:67572608..67573347-chr4:3956745..3957344,2	Hela-S3	cervix:
2	chr1:8938391..8938936-chr11:67572724..67573509,2	Hela-S3	cervix:
3	chr11:67349032..67351635-chr11:67571367..67573562,2	K562	blood:
4	chr11:67396168..67397948-chr11:67571471..67573438,2	K562	blood:
5	chr11:67395020..67397974-chr11:67571574..67573157,2	MCF-7	breast:
6	chr11:67572484..67573077-chr11:71498421..71498985,2	HCT-116	colon:
7	chr1:150551803..150552520-chr11:67572791..67573460,2	Hela-S3	cervix:

Variant related genes	Relation type
FAM86C2P	TF binding region
FAM86C2P	CpG island
ENSG00000084207	Chromatin interaction
ENSG00000074800	Chromatin interaction
ENSG00000230679	Chromatin interaction
ENSG00000158483	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000167799	Chromatin interaction
ENSG00000253917	Chromatin interaction
ENSG00000251669	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10896222	1.00[ASN][1000 genomes]
rs12271915	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126757	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
2	nsv1041988	chr11:67319916-67749246	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1050463	chr11:67343421-67717338	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
4	nsv1038189	chr11:67345320-67749246	Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
5	nsv1047236	chr11:67345320-67764068	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv555268	chr11:67346743-67752972	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
8	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
9	nsv1053811	chr11:67349444-67749246	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	esv1817852	chr11:67349899-67626567	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
11	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
12	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
13	nsv492253	chr11:67358204-67574402	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
14	nsv1043487	chr11:67360899-67662476	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
15	nsv555274	chr11:67433869-67752972	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
16	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
17	nsv1052363	chr11:67472905-67728086	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
18	nsv1044800	chr11:67472905-67736481	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
19	nsv1043580	chr11:67472905-67749246	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
20	esv2757450	chr11:67472905-67891289	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
21	esv2759835	chr11:67472905-67891289	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
22	nsv1047985	chr11:67475601-67747160	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
23	nsv1046044	chr11:67475601-67749246	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
24	esv3418490	chr11:67475667-67754653	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
25	esv3391145	chr11:67477446-67754185	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
26	esv3324655	chr11:67481971-67761855	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
27	nsv1049462	chr11:67482647-67749246	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
28	nsv975944	chr11:67483300-67756642	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
29	nsv897828	chr11:67483828-67748817	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
30	esv2761681	chr11:67484554-67733890	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
31	nsv897831	chr11:67491330-67599548	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	nsv897832	chr11:67491330-67625039	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
33	nsv1052828	chr11:67498020-67661167	Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
34	nsv1036003	chr11:67498020-67695646	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
35	nsv1048996	chr11:67498020-67707358	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
36	nsv1053863	chr11:67498020-67709792	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
37	nsv1044670	chr11:67498020-67732177	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
38	nsv1045331	chr11:67498020-67732314	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
39	nsv1046695	chr11:67498020-67749246	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
40	nsv555275	chr11:67501626-67606530	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
41	nsv818845	chr11:67501626-67673682	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
42	nsv1039721	chr11:67501626-67695646	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
43	nsv468610	chr11:67501626-67715028	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
44	nsv555276	chr11:67501626-67715028	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
45	nsv818846	chr11:67501626-67715028	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
46	nsv516191	chr11:67501626-67748817	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
47	nsv818847	chr11:67501626-67748817	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
48	nsv1049673	chr11:67501626-67749246	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
49	esv2754093	chr11:67502676-67731956	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
50	nsv897833	chr11:67503215-67748817	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67571600-67573800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:67571600-67574000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:67571600-67574200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:67571800-67573800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:67571800-67574200	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:67571800-67574200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:67571800-67574400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:67571800-67574400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr11:67571800-67574600	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr11:67572000-67573600	Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr11:67572000-67573600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:67572000-67573800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:67572000-67573800	Active TSS	Hela-S3	cervix
14	chr11:67572000-67573800	Active TSS	K562	blood
15	chr11:67572000-67574000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:67572000-67574000	Active TSS	Esophagus	oesophagus
17	chr11:67572000-67574000	Active TSS	HepG2	liver
18	chr11:67572000-67574000	Active TSS	NHEK	skin
19	chr11:67572000-67574200	Active TSS	H1 Cell Line	embryonic stem cell
20	chr11:67572000-67574200	Active TSS	H9 Cell Line	embryonic stem cell
21	chr11:67572000-67574200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:67572000-67574200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:67572000-67574200	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr11:67572000-67574200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:67572000-67574200	Active TSS	Fetal Brain Female	brain
26	chr11:67572000-67574400	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr11:67572000-67574400	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr11:67572000-67574400	Active TSS	Colonic Mucosa	Colon
29	chr11:67572200-67573800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:67572200-67573800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:67572200-67573800	Active TSS	Primary T cells from cord blood	blood
32	chr11:67572200-67573800	Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr11:67572200-67573800	Active TSS	Brain Angular Gyrus	brain
34	chr11:67572200-67573800	Active TSS	Brain Substantia Nigra	brain
35	chr11:67572200-67573800	Active TSS	Fetal Intestine Small	intestine
36	chr11:67572200-67573800	Active TSS	Fetal Lung	lung
37	chr11:67572200-67573800	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr11:67572200-67573800	Active TSS	Stomach Smooth Muscle	stomach
39	chr11:67572200-67574000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:67572200-67574000	Active TSS	Brain Anterior Caudate	brain
41	chr11:67572200-67574000	Active TSS	Brain Hippocampus Middle	brain
42	chr11:67572200-67574000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:67572200-67574000	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr11:67572200-67574000	Active TSS	Fetal Intestine Large	intestine
45	chr11:67572200-67574000	Active TSS	Lung	lung
46	chr11:67572200-67574000	Active TSS	Right Ventricle	heart
47	chr11:67572200-67574000	Active TSS	NHDF-Ad	bronchial
48	chr11:67572200-67574200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:67572200-67574200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:67572200-67574200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links