Variant report

Variant	rs12279295
Chromosome Location	chr11:93779417-93779418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10160705	1.00[EUR][1000 genomes]
rs11020672	1.00[EUR][1000 genomes]
rs12272162	1.00[EUR][1000 genomes]
rs12281912	0.81[ASN][1000 genomes]
rs12294798	1.00[EUR][1000 genomes]
rs1518565	0.88[ASN][1000 genomes]
rs1518566	0.85[ASN][1000 genomes]
rs1568259	0.86[ASN][1000 genomes]
rs16919858	0.88[ASN][1000 genomes]
rs1914723	0.86[ASN][1000 genomes]
rs2399749	0.86[ASN][1000 genomes]
rs55960599	0.81[ASN][1000 genomes]
rs6483299	1.00[EUR][1000 genomes]
rs7118579	1.00[EUR][1000 genomes]
rs7125968	1.00[EUR][1000 genomes]
rs7127616	0.81[ASN][1000 genomes]
rs73554817	1.00[EUR][1000 genomes]
rs73554826	1.00[EUR][1000 genomes]
rs73554840	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93768000-93779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:93769800-93787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:93776400-93779600	Enhancers	K562	blood
4	chr11:93778200-93784000	Weak transcription	HMEC	breast
5	chr11:93779000-93780200	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:93779400-93780200	Enhancers	Fetal Intestine Large	intestine
7	chr11:93779400-93780400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:93779400-93780400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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