Variant report

Variant	rs12279946
Chromosome Location	chr11:76741029-76741030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr11:76741020-76741258	A549	lung:	n/a	n/a
2	POLR2A	chr11:76740849-76741029	MCF-7	breast:	n/a	n/a
3	NR3C1	chr11:76740923-76741257	A549	lung:	n/a	n/a
4	CTCF	chr11:76740880-76741030	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76740615..76743800-chr11:76749676..76752420,3	MCF-7	breast:
2	chr11:76740735..76742800-chr11:76743338..76746601,3	K562	blood:
3	chr11:76738547..76742641-chr11:76746550..76751043,4	K562	blood:
4	chr11:76570662..76573443-chr11:76740535..76742561,2	MCF-7	breast:

No data

Variant related genes	Relation type
B3GNT6	TF binding region
ENSG00000198488	Chromatin interaction
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10736811	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10736812	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751263	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10751270	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751271	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793214	0.80[EUR][1000 genomes]
rs10793215	0.80[EUR][1000 genomes]
rs10793220	0.81[EUR][1000 genomes]
rs10793221	0.81[EUR][1000 genomes]
rs10793223	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793224	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793225	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793226	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793227	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793228	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793229	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793230	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793231	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793232	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899303	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899333	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899340	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899341	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899343	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899344	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237031	0.80[EUR][1000 genomes]
rs11237052	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12223659	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286501	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286600	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807735	0.81[EUR][1000 genomes]
rs1517907	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517908	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517909	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517910	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1589126	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1607287	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1850544	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878630	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945083	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945086	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1969315	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1973714	0.89[ASN][1000 genomes]
rs2090524	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2119458	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2156770	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2826	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740764	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740765	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740767	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781697	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824889	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3851191	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3914687	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4145048	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460836	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944132	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944134	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945127	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4945129	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945131	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945132	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945133	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591043	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592678	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592683	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592684	0.80[EUR][1000 genomes]
rs6592689	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592690	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592691	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592692	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6592693	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592694	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7103500	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7105694	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107505	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7110305	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110532	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7113647	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113778	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7119492	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121273	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121920	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122736	0.81[EUR][1000 genomes]
rs7123496	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123694	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123723	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127936	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128038	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129147	0.81[EUR][1000 genomes]
rs7129388	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7924613	0.85[ASN][1000 genomes]
rs7925135	0.85[ASN][1000 genomes]
rs7925652	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925774	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7926122	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926409	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927367	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927731	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931646	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931869	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931894	0.85[ASN][1000 genomes]
rs7940782	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7940972	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942574	0.80[EUR][1000 genomes]
rs7943913	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7950001	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs949339	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949340	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76722600-76741800	Weak transcription	Aorta	Aorta
2	chr11:76722600-76741800	Weak transcription	Gastric	stomach
3	chr11:76732200-76741400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:76732200-76746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:76733000-76746200	Weak transcription	Hela-S3	cervix
6	chr11:76734800-76746400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:76740200-76742800	Enhancers	Stomach Mucosa	stomach
8	chr11:76740400-76742200	Enhancers	Fetal Intestine Small	intestine
9	chr11:76740400-76743200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:76740800-76741600	Enhancers	Duodenum Mucosa	Duodenum
11	chr11:76740800-76741600	Bivalent Enhancer	K562	blood
12	chr11:76740800-76742000	Enhancers	Fetal Intestine Large	intestine

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