Variant report

Variant	rs12281072
Chromosome Location	chr11:10025770-10025771
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11042538	0.80[YRI][hapmap]
rs11042544	0.84[YRI][hapmap]
rs11042565	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042587	0.84[YRI][hapmap]
rs11042590	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs11042591	0.82[AFR][1000 genomes]
rs11042597	0.84[YRI][hapmap]
rs11042616	1.00[EUR][1000 genomes]
rs11042619	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11042631	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs11042651	0.86[YRI][hapmap]
rs12270278	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12270444	0.84[YRI][hapmap]
rs12271480	0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12272306	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12274021	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs12275641	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs12276925	1.00[EUR][1000 genomes]
rs12279495	0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs12279936	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12280877	1.00[EUR][1000 genomes]
rs12282728	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12283105	0.91[YRI][hapmap]
rs12285093	0.81[AFR][1000 genomes]
rs12291188	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12295264	0.84[YRI][hapmap]
rs13377400	0.81[AFR][1000 genomes]
rs13377561	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs2403227	0.86[YRI][hapmap]
rs4576815	0.85[YRI][hapmap]
rs56948226	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57672320	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
2	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
3	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
4	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
7	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
15	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:10010600-10026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:10010600-10030000	Weak transcription	Primary T cells from cord blood	blood
23	chr11:10010600-10051200	Weak transcription	Ovary	ovary
24	chr11:10011200-10027200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:10011600-10027200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:10011600-10028000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:10012000-10026200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:10012600-10049000	Weak transcription	Fetal Kidney	kidney
29	chr11:10013400-10026600	Weak transcription	A549	lung
30	chr11:10017600-10026400	Weak transcription	NHEK	skin
31	chr11:10017600-10027200	Weak transcription	Fetal Intestine Small	intestine
32	chr11:10018000-10031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:10020400-10026200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:10020400-10027000	Weak transcription	Adipose Nuclei	Adipose
35	chr11:10020400-10027200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:10020400-10027200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:10020400-10027400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:10020400-10027600	Weak transcription	Fetal Lung	lung
39	chr11:10021000-10031400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:10021600-10026200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:10021800-10030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:10022000-10026400	Weak transcription	Placenta	Placenta
43	chr11:10022200-10027400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:10022600-10027200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:10022600-10027800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:10022600-10032400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:10023800-10033400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:10024200-10047800	Weak transcription	Osteobl	bone
49	chr11:10024600-10025800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:10024600-10041600	Weak transcription	HUVEC	blood vessel

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