Variant report

Variant	rs12281679
Chromosome Location	chr11:35267294-35267295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11033026	1.00[CHB][hapmap]
rs12275544	1.00[AMR][1000 genomes]
rs61618750	1.00[AMR][1000 genomes]
rs7122176	1.00[AMR][1000 genomes]
rs7131582	1.00[AMR][1000 genomes]
rs7938147	1.00[AMR][1000 genomes]
rs7938263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35258400-35267400	Weak transcription	Aorta	Aorta
2	chr11:35258400-35269000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:35258800-35267400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:35259200-35270200	Weak transcription	Stomach Mucosa	stomach
5	chr11:35260800-35270200	Weak transcription	Fetal Lung	lung
6	chr11:35262600-35269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:35262600-35270600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:35263000-35270000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:35263000-35270000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:35263000-35270200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:35263000-35270200	Weak transcription	Fetal Brain Male	brain
12	chr11:35263400-35270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:35263600-35270000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr11:35264400-35267400	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:35264400-35268200	Weak transcription	NHLF	lung
16	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:35264600-35267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:35264600-35268000	Weak transcription	HSMMtube	muscle
19	chr11:35264600-35268400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:35264800-35268200	Weak transcription	Osteobl	bone
21	chr11:35264800-35270000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr11:35264800-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:35265000-35267600	Weak transcription	HSMM	muscle
25	chr11:35265400-35267600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:35265400-35270200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:35265800-35270200	Weak transcription	Pancreas	Pancrea
28	chr11:35265800-35305800	Weak transcription	HepG2	liver
29	chr11:35266000-35269600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr11:35266400-35267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:35266400-35267600	Weak transcription	Primary T cells from cord blood	blood
32	chr11:35266600-35268000	Enhancers	Fetal Heart	heart
33	chr11:35266600-35269200	Enhancers	Fetal Stomach	stomach
34	chr11:35266800-35267800	Enhancers	Stomach Smooth Muscle	stomach
35	chr11:35266800-35269000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:35266800-35269800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr11:35266800-35269800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:35267000-35269200	Enhancers	NHDF-Ad	bronchial
39	chr11:35267200-35269400	Enhancers	Rectal Smooth Muscle	rectum

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