Variant report

Variant	rs12281784
Chromosome Location	chr11:46908250-46908251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46906050..46908923-chr11:46929024..46931745,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10466476	0.86[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.88[CEU][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.88[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	0.87[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136478	0.88[YRI][hapmap]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136485	0.86[YRI][hapmap]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	0.82[CEU][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	0.88[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs59197251	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.88[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.88[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7108147	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	1.00[CEU][hapmap]
rs7115986	0.88[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.88[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
3	chr11:46868800-46913000	Weak transcription	A549	lung
4	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
13	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
15	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
17	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
20	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
21	chr11:46895400-46917400	Weak transcription	NHLF	lung
22	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
23	chr11:46897400-46921800	Weak transcription	HMEC	breast
24	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
25	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:46898600-46916600	Weak transcription	Liver	Liver
28	chr11:46898800-46916600	Weak transcription	Gastric	stomach
29	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
30	chr11:46899000-46910400	Weak transcription	NHEK	skin
31	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:46899600-46914200	Weak transcription	Brain Germinal Matrix	brain
33	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
35	chr11:46901000-46913400	Weak transcription	Right Ventricle	heart
36	chr11:46901400-46917400	Weak transcription	NH-A	brain
37	chr11:46902200-46908800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:46902200-46909000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:46902400-46908600	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:46902400-46908800	Strong transcription	Brain Anterior Caudate	brain
41	chr11:46902600-46909200	Strong transcription	Fetal Intestine Large	intestine
42	chr11:46902600-46909200	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:46903000-46908600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:46903000-46908800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:46903000-46909000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:46903000-46912000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:46903200-46909000	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:46904800-46908600	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr11:46904800-46908600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:46904800-46909000	Strong transcription	Spleen	Spleen

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