Variant report

Variant	rs12285197
Chromosome Location	chr11:35339817-35339818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35325082..35329028-chr11:35338650..35340551,3	MCF-7	breast:
2	chr11:35338073..35340273-chr11:35341341..35343774,3	MCF-7	breast:
3	chr11:35315763..35317448-chr11:35338066..35339856,2	MCF-7	breast:
4	chr11:35339447..35341142-chr11:35384783..35386762,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11033067	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033072	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033092	1.00[EUR][1000 genomes]
rs12269851	1.00[EUR][1000 genomes]
rs12270176	1.00[EUR][1000 genomes]
rs12271412	1.00[EUR][1000 genomes]
rs12274991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12276318	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12276739	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12290877	1.00[EUR][1000 genomes]
rs2236274	1.00[EUR][1000 genomes]
rs3794085	1.00[EUR][1000 genomes]
rs3794092	1.00[EUR][1000 genomes]
rs4083482	0.91[ASN][1000 genomes]
rs7123447	1.00[EUR][1000 genomes]
rs7124363	1.00[EUR][1000 genomes]
rs7124645	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324400-35343200	Weak transcription	Gastric	stomach
2	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
3	chr11:35327200-35340600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:35327800-35340400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:35327800-35340800	Weak transcription	NHLF	lung
6	chr11:35329600-35340800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:35329800-35340600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:35330000-35340800	Weak transcription	Fetal Brain Male	brain
9	chr11:35332000-35343800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:35332400-35340800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:35335400-35340400	Weak transcription	Primary T cells from cord blood	blood
12	chr11:35335400-35340400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:35335400-35340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:35335600-35340600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:35335600-35340800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:35335600-35341800	Weak transcription	Brain Anterior Caudate	brain
17	chr11:35335600-35342800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:35335600-35343200	Weak transcription	Left Ventricle	heart
19	chr11:35335600-35343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:35336800-35340000	Weak transcription	Liver	Liver
21	chr11:35337800-35341400	Enhancers	GM12878-XiMat	blood
22	chr11:35338000-35340000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:35338000-35341400	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:35338000-35342400	Weak transcription	HSMM	muscle
25	chr11:35338000-35343000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:35338200-35340400	Weak transcription	NHDF-Ad	bronchial
27	chr11:35338200-35341000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:35338200-35343400	Weak transcription	Osteobl	bone
29	chr11:35338400-35340000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:35338600-35340000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:35338600-35340400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:35338600-35343200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:35338800-35340000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:35338800-35340200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:35338800-35340800	Weak transcription	Fetal Brain Female	brain
36	chr11:35338800-35341400	Enhancers	Primary B cells from cord blood	blood
37	chr11:35339000-35340400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:35339000-35340600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:35339000-35340600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:35339000-35340600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:35339000-35341800	Weak transcription	Brain Germinal Matrix	brain
42	chr11:35339000-35343400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:35339000-35358000	Weak transcription	HepG2	liver
44	chr11:35339200-35340600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:35339200-35344200	Weak transcription	Psoas Muscle	Psoas
46	chr11:35339400-35340600	Weak transcription	Pancreas	Pancrea
47	chr11:35339600-35340000	Weak transcription	Aorta	Aorta
48	chr11:35339600-35341400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr11:35339800-35341400	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr11:35339800-35342000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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