Variant report

Variant	rs12285798
Chromosome Location	chr11:56976583-56976584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10160780	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11228934	0.89[AFR][1000 genomes]
rs11228956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12271407	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12283943	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12295604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56971200-56978000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:56973000-56977800	Weak transcription	Fetal Lung	lung
3	chr11:56973400-56977000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:56973400-56978000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:56973600-56977600	Weak transcription	Fetal Stomach	stomach
6	chr11:56973600-56978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:56973600-56978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:56973600-56980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:56973800-56978000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:56973800-56978000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:56973800-56978200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:56974000-56978000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:56974000-56978200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:56974000-56980400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:56974200-56978200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:56974400-56977600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:56974400-56978000	Weak transcription	Lung	lung
19	chr11:56974800-56978200	Weak transcription	Right Ventricle	heart
20	chr11:56975000-56978200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:56975200-56977600	Weak transcription	Spleen	Spleen
22	chr11:56975200-56978400	Weak transcription	Left Ventricle	heart
23	chr11:56975200-56981000	Weak transcription	Right Atrium	heart
24	chr11:56975400-56977600	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:56975600-56978200	Weak transcription	Adipose Nuclei	Adipose
26	chr11:56976200-56977400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links