Variant report

Variant	rs12285914
Chromosome Location	chr11:17075116-17075117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11024138	1.00[AFR][1000 genomes]
rs11024168	0.83[AFR][1000 genomes]
rs11024169	0.91[AFR][1000 genomes]
rs11024170	0.83[AFR][1000 genomes]
rs11024172	0.83[AFR][1000 genomes]
rs11024176	0.83[AFR][1000 genomes]
rs11024177	0.83[AFR][1000 genomes]
rs12270759	0.81[AFR][1000 genomes]
rs12275377	0.83[AFR][1000 genomes]
rs12283841	0.83[AFR][1000 genomes]
rs12287127	0.83[AFR][1000 genomes]
rs12288475	0.83[AFR][1000 genomes]
rs12289881	0.83[AFR][1000 genomes]
rs12291395	1.00[AFR][1000 genomes]
rs12292965	1.00[AFR][1000 genomes]
rs28544981	0.83[AFR][1000 genomes]
rs61762000	0.91[AFR][1000 genomes]
rs61763070	1.00[AFR][1000 genomes]
rs61763087	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv971988	chr11:17068362-17084978	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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