Variant report

Variant	rs12286467
Chromosome Location	chr11:120558155-120558156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120557930..120559568-chr11:120564023..120565986,2	MCF-7	breast:
2	chr11:120557344..120559248-chr11:120561871..120563777,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10502240	0.80[CEU][hapmap]
rs10790393	0.80[CEU][hapmap]
rs10790394	0.80[CEU][hapmap]
rs10892593	0.81[CEU][hapmap]
rs10892595	0.81[CEU][hapmap]
rs10892596	0.80[CEU][hapmap]
rs10892599	0.80[CEU][hapmap]
rs10892600	0.80[CEU][hapmap]
rs10892603	0.81[CEU][hapmap]
rs10892604	0.80[CEU][hapmap]
rs10892605	0.81[CEU][hapmap]
rs10892611	0.81[CEU][hapmap]
rs10892613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892616	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11217955	0.81[CEU][hapmap]
rs11217958	0.81[CEU][hapmap]
rs11217959	0.81[CEU][hapmap]
rs11217962	0.85[CEU][hapmap]
rs11217965	0.81[CEU][hapmap]
rs11217970	0.80[CEU][hapmap]
rs11217972	0.81[CEU][hapmap]
rs11603586	0.80[CEU][hapmap]
rs11607732	0.80[CEU][hapmap]
rs12224951	0.88[CEU][hapmap]
rs12225752	0.81[CEU][hapmap]
rs12272864	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs12273984	0.96[ASN][1000 genomes]
rs12278795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12280296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12281001	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12281008	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12283240	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12284730	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12287882	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12288261	0.95[ASN][1000 genomes]
rs12291927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12292552	0.89[YRI][hapmap]
rs12293393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12294046	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12295200	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12360673	0.80[CEU][hapmap]
rs2846109	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4628679	0.81[CEU][hapmap]
rs58356578	0.88[ASN][1000 genomes]
rs61901360	0.97[ASN][1000 genomes]
rs61901361	0.96[ASN][1000 genomes]
rs61901362	0.96[ASN][1000 genomes]
rs61901364	0.96[ASN][1000 genomes]
rs61901366	0.95[ASN][1000 genomes]
rs61901367	0.95[ASN][1000 genomes]
rs61901368	0.95[ASN][1000 genomes]
rs61901369	0.95[ASN][1000 genomes]
rs61901371	0.95[ASN][1000 genomes]
rs61901372	0.95[ASN][1000 genomes]
rs61901373	0.95[ASN][1000 genomes]
rs61901374	0.95[ASN][1000 genomes]
rs61901375	0.95[ASN][1000 genomes]
rs61901377	0.93[ASN][1000 genomes]
rs61901382	0.92[ASN][1000 genomes]
rs61901400	0.81[ASN][1000 genomes]
rs61902683	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61902686	0.96[ASN][1000 genomes]
rs61902687	0.96[ASN][1000 genomes]
rs6589834	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7944756	1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120553800-120562400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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