Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10502115	0.96[ASN][1000 genomes]
rs11212973	0.99[ASN][1000 genomes]
rs11213005	0.81[ASN][1000 genomes]
rs11213006	0.81[ASN][1000 genomes]
rs11500820	0.96[ASN][1000 genomes]
rs11501030	0.96[ASN][1000 genomes]
rs12274062	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12274450	0.83[ASN][1000 genomes]
rs12278048	1.00[ASN][1000 genomes]
rs12278123	0.83[ASN][1000 genomes]
rs12278419	0.91[ASN][1000 genomes]
rs12280588	1.00[ASN][1000 genomes]
rs12281817	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286885	0.94[ASN][1000 genomes]
rs17109266	1.00[ASN][1000 genomes]
rs17109316	0.83[ASN][1000 genomes]
rs28493423	0.81[ASN][1000 genomes]
rs59169120	0.83[ASN][1000 genomes]
rs60455184	0.96[ASN][1000 genomes]
rs60529773	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73549130	1.00[ASN][1000 genomes]
rs73549140	1.00[ASN][1000 genomes]
rs73549142	1.00[ASN][1000 genomes]
rs73549144	1.00[ASN][1000 genomes]
rs73549154	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7947836	0.85[ASN][1000 genomes]
rs906911	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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