Variant report

Variant	rs12286885
Chromosome Location	chr11:109068770-109068771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047461	0.89[AMR][1000 genomes]
rs10502115	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11212973	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11213011	0.89[AMR][1000 genomes]
rs11500820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11501030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12274450	1.00[AMR][1000 genomes]
rs12278048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12278419	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12280588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12280688	0.89[AMR][1000 genomes]
rs12281817	0.94[ASN][1000 genomes]
rs12286507	0.94[ASN][1000 genomes]
rs12286661	0.89[AMR][1000 genomes]
rs12289139	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12289743	0.86[AFR][1000 genomes]
rs12291774	0.89[AMR][1000 genomes]
rs12291996	0.89[AMR][1000 genomes]
rs17109266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17109316	1.00[AMR][1000 genomes]
rs55719520	0.89[AMR][1000 genomes]
rs59169120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60395902	0.89[AMR][1000 genomes]
rs60455184	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60528878	0.89[AMR][1000 genomes]
rs60529773	0.94[ASN][1000 genomes]
rs60773539	0.89[AMR][1000 genomes]
rs73549130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73549140	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73549142	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73549144	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73549154	0.94[ASN][1000 genomes]
rs906911	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109066800-109069000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:109067200-109069600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:109067600-109069000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:109068000-109069000	Enhancers	Osteobl	bone
5	chr11:109068200-109068800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:109068200-109068800	Enhancers	HMEC	breast
7	chr11:109068200-109068800	Enhancers	NH-A	brain
8	chr11:109068200-109069000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:109068200-109069600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:109068200-109069600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:109068400-109069000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:109068400-109069000	Enhancers	Aorta	Aorta
13	chr11:109068400-109069000	Enhancers	A549	lung
14	chr11:109068600-109069000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:109068600-109069200	Enhancers	Primary hematopoietic stem cells	blood

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