Variant report

Variant	rs12288376
Chromosome Location	chr11:17069846-17069847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10466419	1.00[AFR][1000 genomes]
rs10832711	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10832732	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10832742	1.00[AFR][1000 genomes]
rs11024115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024165	1.00[AFR][1000 genomes]
rs11024196	1.00[AFR][1000 genomes]
rs11024198	1.00[AFR][1000 genomes]
rs12285874	1.00[AFR][1000 genomes]
rs17847718	0.83[ASN][1000 genomes]
rs17847726	0.83[ASN][1000 genomes]
rs4757495	0.90[EUR][1000 genomes]
rs61762002	0.83[ASN][1000 genomes]
rs61763074	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv971988	chr11:17068362-17084978	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17066800-17070600	Enhancers	Fetal Intestine Small	intestine
2	chr11:17067400-17071000	Enhancers	Fetal Intestine Large	intestine
3	chr11:17067600-17071000	Enhancers	HepG2	liver
4	chr11:17068400-17070000	Enhancers	Gastric	stomach
5	chr11:17069400-17070000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
7	chr11:17069600-17070400	Enhancers	Liver	Liver
8	chr11:17069600-17070600	Enhancers	Placenta	Placenta
9	chr11:17069800-17071000	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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