Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10466676	1.00[CEU][hapmap]
rs10896466	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11228609	0.89[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11228659	1.00[CEU][hapmap]
rs11228683	0.87[AMR][1000 genomes]
rs11228703	0.84[AMR][1000 genomes]
rs11606499	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes]
rs11822250	0.88[EUR][1000 genomes]
rs12271019	0.87[AMR][1000 genomes]
rs12292656	1.00[CEU][hapmap]
rs13377528	0.84[EUR][1000 genomes]
rs13377553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1351533	0.89[CEU][hapmap]
rs1397049	1.00[CEU][hapmap]
rs1945270	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs41391545	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs55677906	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67907199	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68106151	0.82[EUR][1000 genomes]
rs7111150	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7112358	0.81[AMR][1000 genomes]
rs7119529	1.00[CEU][hapmap]
rs7121276	1.00[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap]
rs7483053	1.00[CEU][hapmap]
rs7948303	1.00[CEU][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv555098	chr11:56299566-56300082	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12290501	APLNR	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56298400-56302000	Enhancers	Fetal Intestine Large	intestine
2	chr11:56299400-56301200	Enhancers	Fetal Intestine Small	intestine

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