Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120680102..120682899-chr11:120699735..120701438,2	MCF-7	breast:
2	chr11:120679595..120682916-chr11:120688352..120691121,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10502239	1.00[MEX][hapmap]
rs11218009	1.00[EUR][1000 genomes]
rs11218020	1.00[EUR][1000 genomes]
rs11218033	1.00[EUR][1000 genomes]
rs11501142	1.00[EUR][1000 genomes]
rs11822985	1.00[EUR][1000 genomes]
rs12270392	1.00[EUR][1000 genomes]
rs12275938	1.00[EUR][1000 genomes]
rs12278293	1.00[EUR][1000 genomes]
rs12278548	1.00[EUR][1000 genomes]
rs12279279	1.00[EUR][1000 genomes]
rs12279371	1.00[EUR][1000 genomes]
rs12285831	1.00[ASW][hapmap];1.00[EUR][1000 genomes]
rs12286020	1.00[EUR][1000 genomes]
rs12289919	1.00[EUR][1000 genomes]
rs12291509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291645	1.00[EUR][1000 genomes]
rs12294917	1.00[EUR][1000 genomes]
rs17124355	1.00[EUR][1000 genomes]
rs57090447	1.00[EUR][1000 genomes]
rs57940959	1.00[EUR][1000 genomes]
rs58190380	1.00[EUR][1000 genomes]
rs61512619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114795	1.00[EUR][1000 genomes]
rs73578576	1.00[EUR][1000 genomes]
rs73578585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580678	1.00[EUR][1000 genomes]
rs73580685	1.00[EUR][1000 genomes]
rs7938287	1.00[EUR][1000 genomes]
rs7948126	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120673600-120687800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120673600-120687800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120674000-120696000	Weak transcription	Fetal Lung	lung
5	chr11:120678800-120683600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:120678800-120688000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:120679800-120685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120680000-120685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:120680200-120683200	Weak transcription	Liver	Liver
10	chr11:120680200-120683200	Weak transcription	Placenta	Placenta
11	chr11:120680200-120695000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:120681200-120687000	Weak transcription	HepG2	liver
13	chr11:120681200-120687800	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:120681600-120682200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr11:120682000-120683600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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