Variant report

Variant	rs12291998
Chromosome Location	chr11:46959289-46959290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46958122..46959949-chr11:47174429..47176046,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12272266	0.84[AMR][1000 genomes]
rs12288724	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12290283	0.81[AMR][1000 genomes]
rs4084459	0.84[AMR][1000 genomes]
rs55924076	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61040275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61516301	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7103266	0.86[AFR][1000 genomes]
rs7118724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125863	0.85[AFR][1000 genomes]
rs7127446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460086	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7930293	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46958600-46973800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:46958800-46969400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46959000-46959400	Weak transcription	Fetal Stomach	stomach
4	chr11:46959000-46959600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:46959000-46959600	Enhancers	Fetal Brain Male	brain
6	chr11:46959000-46960000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:46959000-46962200	Weak transcription	Osteobl	bone
8	chr11:46959000-46962400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:46959000-46962600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:46959000-46962800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:46959000-46964600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:46959000-46964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:46959000-46966200	Weak transcription	Placenta	Placenta
14	chr11:46959000-46966800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:46959000-46968000	Weak transcription	Spleen	Spleen
16	chr11:46959000-46968800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:46959000-46969000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:46959000-46969200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:46959000-46969400	Weak transcription	Colonic Mucosa	Colon
20	chr11:46959000-46969400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:46959000-46969400	Weak transcription	Pancreas	Pancrea
22	chr11:46959000-46969600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:46959000-46969600	Weak transcription	HSMMtube	muscle
24	chr11:46959000-46973400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:46959000-46973600	Weak transcription	HUVEC	blood vessel
26	chr11:46959000-46973800	Weak transcription	Primary T cells from cord blood	blood
27	chr11:46959000-46973800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:46959000-46973800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:46959000-46975600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:46959000-46977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:46959000-46980000	Weak transcription	Aorta	Aorta
32	chr11:46959000-46980000	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:46959000-46980000	Weak transcription	Ovary	ovary
34	chr11:46959000-46980200	Weak transcription	Primary B cells from cord blood	blood
35	chr11:46959000-46980200	Weak transcription	Gastric	stomach
36	chr11:46959000-46980200	Weak transcription	Lung	lung
37	chr11:46959000-46980200	Weak transcription	Thymus	Thymus
38	chr11:46959000-46981000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:46959000-46982200	Weak transcription	Fetal Kidney	kidney
40	chr11:46959000-46982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:46959000-46982600	Weak transcription	Fetal Thymus	thymus
42	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
43	chr11:46959200-46959400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:46959200-46959400	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr11:46959200-46959400	Enhancers	Brain Germinal Matrix	brain
46	chr11:46959200-46959400	Enhancers	Fetal Intestine Large	intestine
47	chr11:46959200-46959600	Active TSS	Fetal Brain Female	brain
48	chr11:46959200-46959800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:46959200-46960000	Weak transcription	Brain Anterior Caudate	brain
50	chr11:46959200-46960000	Weak transcription	GM12878-XiMat	blood

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