Variant report

Variant	rs12292965
Chromosome Location	chr11:17128090-17128091
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17097491..17099357-chr11:17127400..17130821,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11024138	1.00[AFR][1000 genomes]
rs11024168	0.83[AFR][1000 genomes]
rs11024169	0.91[AFR][1000 genomes]
rs11024170	0.83[AFR][1000 genomes]
rs11024172	0.83[AFR][1000 genomes]
rs11024176	0.83[AFR][1000 genomes]
rs11024177	0.83[AFR][1000 genomes]
rs11024214	1.00[YRI][hapmap]
rs11024237	1.00[YRI][hapmap]
rs12270759	0.81[AFR][1000 genomes]
rs12272752	1.00[YRI][hapmap]
rs12275377	0.83[AFR][1000 genomes]
rs12277622	1.00[YRI][hapmap]
rs12283197	1.00[YRI][hapmap]
rs12283841	0.83[AFR][1000 genomes]
rs12285914	1.00[AFR][1000 genomes]
rs12287127	0.83[AFR][1000 genomes]
rs12288105	1.00[YRI][hapmap]
rs12288475	0.83[AFR][1000 genomes]
rs12289881	0.83[AFR][1000 genomes]
rs12291395	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12292310	1.00[YRI][hapmap]
rs12293793	1.00[YRI][hapmap]
rs28544981	0.83[AFR][1000 genomes]
rs61762000	0.91[AFR][1000 genomes]
rs61763070	1.00[AFR][1000 genomes]
rs61763087	1.00[AFR][1000 genomes]
rs7924495	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
2	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:17108200-17141400	Strong transcription	Liver	Liver
8	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:17110000-17128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:17110000-17128400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:17110200-17132800	Strong transcription	Fetal Intestine Large	intestine
19	chr11:17110200-17136400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:17113600-17130000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:17115800-17154400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:17116800-17134800	Weak transcription	NHLF	lung
25	chr11:17116800-17149800	Weak transcription	A549	lung
26	chr11:17117800-17147000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:17117800-17151800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:17118200-17129000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:17118200-17135600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:17118200-17139400	Strong transcription	Placenta	Placenta
31	chr11:17118200-17141400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:17118400-17128400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:17118400-17139200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr11:17118400-17146800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:17119200-17130200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:17119400-17134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:17119600-17128400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:17119800-17128600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:17120400-17130200	Weak transcription	Brain Germinal Matrix	brain
40	chr11:17120400-17131200	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:17120400-17157800	Weak transcription	Stomach Mucosa	stomach
42	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:17120600-17129600	Weak transcription	Spleen	Spleen
44	chr11:17120600-17130000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:17120600-17155800	Weak transcription	Esophagus	oesophagus
46	chr11:17120800-17129400	Weak transcription	Right Ventricle	heart
47	chr11:17120800-17156200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
49	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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