Variant report

Variant	rs12293745
Chromosome Location	chr11:34513560-34513561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34508412..34512527-chr11:34512601..34514689,3	MCF-7	breast:
2	chr11:34508032..34510036-chr11:34510118..34513690,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11032656	0.89[EUR][1000 genomes]
rs11032672	0.92[EUR][1000 genomes]
rs11032702	0.85[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107573	0.85[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12269988	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272630	0.88[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273124	0.85[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275712	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285026	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285064	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288793	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295136	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925514	0.85[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17883208	0.87[EUR][1000 genomes]
rs17884086	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57360584	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58817388	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59468184	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7114869	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7121907	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125892	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73436768	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926613	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941147	1.00[CEU][hapmap]
rs9282626	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34512200-34517200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:34513200-34514400	Weak transcription	HepG2	liver

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