Variant report

Variant	rs12293938
Chromosome Location	chr11:17257154-17257155
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10437606	0.91[AFR][1000 genomes]
rs11024191	0.91[AFR][1000 genomes]
rs11024200	0.91[AFR][1000 genomes]
rs11024205	1.00[AFR][1000 genomes]
rs11024209	1.00[AFR][1000 genomes]
rs11024210	1.00[AFR][1000 genomes]
rs11024214	0.91[AFR][1000 genomes]
rs11024224	1.00[AFR][1000 genomes]
rs11024225	1.00[AFR][1000 genomes]
rs12270107	0.91[AFR][1000 genomes]
rs12270787	0.91[AFR][1000 genomes]
rs12271185	1.00[AFR][1000 genomes]
rs12271462	1.00[AFR][1000 genomes]
rs12273822	0.91[AFR][1000 genomes]
rs12274808	0.91[AFR][1000 genomes]
rs12275868	1.00[AFR][1000 genomes]
rs12277497	0.91[AFR][1000 genomes]
rs12277622	0.91[AFR][1000 genomes]
rs12280196	1.00[AFR][1000 genomes]
rs12281046	0.91[AFR][1000 genomes]
rs12282134	1.00[AFR][1000 genomes]
rs12283197	0.91[AFR][1000 genomes]
rs12284302	1.00[AFR][1000 genomes]
rs12284418	1.00[AFR][1000 genomes]
rs12284697	0.91[AFR][1000 genomes]
rs12286496	0.91[AFR][1000 genomes]
rs12287981	0.91[AFR][1000 genomes]
rs12288071	0.91[AFR][1000 genomes]
rs12288105	0.91[AFR][1000 genomes]
rs12289626	1.00[AFR][1000 genomes]
rs12289628	1.00[AFR][1000 genomes]
rs12290259	0.91[AFR][1000 genomes]
rs12290804	0.91[AFR][1000 genomes]
rs12291427	0.91[AFR][1000 genomes]
rs12291561	0.91[AFR][1000 genomes]
rs12292310	0.91[AFR][1000 genomes]
rs12293230	0.82[AFR][1000 genomes]
rs12293863	1.00[AFR][1000 genomes]
rs12294645	0.91[AFR][1000 genomes]
rs12295187	0.82[AFR][1000 genomes]
rs12295410	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17256200-17259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:17257000-17257400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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