Variant report

Variant	rs12295667
Chromosome Location	chr11:70861705-70861706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10897725	0.86[EUR][1000 genomes]
rs10897726	0.86[EUR][1000 genomes]
rs11232300	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11232301	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11232304	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11232305	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12271307	0.88[EUR][1000 genomes]
rs12272223	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12273513	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12273863	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12274896	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12282822	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12289383	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4245462	0.87[EUR][1000 genomes]
rs4304805	0.86[EUR][1000 genomes]
rs4334036	0.87[EUR][1000 genomes]
rs4424695	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944245	0.86[EUR][1000 genomes]
rs55664123	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55988920	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56144630	0.81[EUR][1000 genomes]
rs7107858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123898	0.88[EUR][1000 genomes]
rs72959509	0.81[EUR][1000 genomes]
rs7932968	0.84[EUR][1000 genomes]
rs7933736	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7933912	0.88[EUR][1000 genomes]
rs7945968	0.86[EUR][1000 genomes]
rs7949824	0.88[EUR][1000 genomes]
rs7950101	0.88[EUR][1000 genomes]
rs9888167	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9888173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9888203	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9888299	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:70858200-70891000	Weak transcription	Gastric	stomach
4	chr11:70858400-70862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:70858400-70863600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:70858600-70865400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:70858800-70862600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:70858800-70862800	Weak transcription	Liver	Liver
9	chr11:70859800-70862600	Weak transcription	HepG2	liver
10	chr11:70860400-70861800	Weak transcription	Pancreas	Pancrea
11	chr11:70860600-70864400	Weak transcription	Fetal Kidney	kidney
12	chr11:70861400-70863600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:70861600-70862000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:70861600-70862000	ZNF genes & repeats	A549	lung
15	chr11:70861600-70862200	ZNF genes & repeats	Fetal Intestine Small	intestine

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