Variant report

Variant	rs12295720
Chromosome Location	chr11:60033394-60033395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:60032822..60033979-chr11:60101691..60102332,4	MCF-7	breast:
2	chr11:60032810..60033796-chr11:60252992..60253975,8	MCF-7	breast:
3	chr11:60032866..60033678-chr11:60386156..60387030,2	MCF-7	breast:
4	chr11:60033101..60034036-chr11:60236873..60237631,2	MCF-7	breast:
5	chr11:60033115..60033927-chr11:60253131..60253845,3	MCF-7	breast:
6	chr11:60033229..60033763-chr11:60252978..60253976,4	K562	blood:
7	chr11:60032789..60033679-chr11:60101235..60102123,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166926	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10082619	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10082648	1.00[AMR][1000 genomes]
rs10128741	1.00[AMR][1000 genomes]
rs10466662	1.00[AMR][1000 genomes]
rs10466683	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10897012	1.00[AMR][1000 genomes]
rs11230139	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11230159	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11230175	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11230176	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11230177	1.00[AMR][1000 genomes]
rs11230179	1.00[AMR][1000 genomes]
rs11230181	1.00[AMR][1000 genomes]
rs11230185	1.00[AMR][1000 genomes]
rs11230189	1.00[AMR][1000 genomes]
rs11230191	1.00[AMR][1000 genomes]
rs11501460	1.00[AMR][1000 genomes]
rs12269729	1.00[AMR][1000 genomes]
rs12270211	1.00[AMR][1000 genomes]
rs12271072	1.00[AMR][1000 genomes]
rs12271845	1.00[AMR][1000 genomes]
rs12271938	1.00[AMR][1000 genomes]
rs12272417	1.00[AMR][1000 genomes]
rs12274187	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12277654	1.00[AMR][1000 genomes]
rs12278512	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279586	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12281124	1.00[AMR][1000 genomes]
rs12281249	1.00[AMR][1000 genomes]
rs12281339	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12281633	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282483	1.00[AMR][1000 genomes]
rs12284742	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12285212	1.00[AMR][1000 genomes]
rs12285390	1.00[AMR][1000 genomes]
rs12286820	1.00[AMR][1000 genomes]
rs12286935	1.00[AMR][1000 genomes]
rs12287486	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12287735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288390	1.00[AMR][1000 genomes]
rs12288966	1.00[AMR][1000 genomes]
rs12289301	1.00[AMR][1000 genomes]
rs12289305	1.00[AMR][1000 genomes]
rs12289397	1.00[AMR][1000 genomes]
rs12291241	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12291355	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12291992	1.00[AMR][1000 genomes]
rs12292001	1.00[YRI][hapmap]
rs12293784	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12293900	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12294265	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12294531	1.00[AMR][1000 genomes]
rs12295325	1.00[AMR][1000 genomes]
rs13377336	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1837785	1.00[AMR][1000 genomes]
rs4405337	1.00[AMR][1000 genomes]
rs57191082	1.00[AMR][1000 genomes]
rs58413906	1.00[AMR][1000 genomes]
rs59692218	1.00[AMR][1000 genomes]
rs59786720	1.00[AMR][1000 genomes]
rs60175493	1.00[AMR][1000 genomes]
rs61363655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60030800-60033400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60033000-60033600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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