Variant report

Variant	rs12296316
Chromosome Location	chr12:86673989-86673990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10160933	0.87[YRI][hapmap]
rs11103901	0.88[YRI][hapmap];1.00[AFR][1000 genomes]
rs11103902	0.88[YRI][hapmap];1.00[AFR][1000 genomes]
rs11103905	1.00[AFR][1000 genomes]
rs11103906	1.00[AFR][1000 genomes]
rs11103907	1.00[AFR][1000 genomes]
rs11103910	0.88[YRI][hapmap]
rs11103922	1.00[YRI][hapmap]
rs11103937	0.88[YRI][hapmap]
rs11103956	0.85[YRI][hapmap]
rs11103959	1.00[YRI][hapmap]
rs12298208	1.00[AFR][1000 genomes]
rs12298422	1.00[AFR][1000 genomes]
rs12299772	1.00[AFR][1000 genomes]
rs12299950	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs12300410	0.84[AFR][1000 genomes]
rs12303146	0.88[AFR][1000 genomes]
rs12304625	0.87[YRI][hapmap]
rs12305480	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs12306070	0.88[YRI][hapmap]
rs12306455	1.00[AFR][1000 genomes]
rs12306583	0.94[AFR][1000 genomes]
rs12306726	0.85[YRI][hapmap]
rs12308711	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs12309297	1.00[AFR][1000 genomes]
rs12311208	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs12311647	0.88[YRI][hapmap]
rs12315031	1.00[AFR][1000 genomes]
rs12316205	0.88[AFR][1000 genomes]
rs12316480	0.87[YRI][hapmap]
rs12318124	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs12318366	0.88[YRI][hapmap]
rs12318727	0.88[AFR][1000 genomes]
rs12318998	1.00[YRI][hapmap]
rs12319070	1.00[YRI][hapmap]
rs12321412	0.87[YRI][hapmap]
rs12321594	1.00[YRI][hapmap]
rs12321784	1.00[YRI][hapmap]
rs4842468	0.87[YRI][hapmap]
rs9971936	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045386	chr12:86616015-86733418	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv541565	chr12:86616015-86733418	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1843214	chr12:86673989-86703959	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv1850061	chr12:86673989-86703959	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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