Variant report

Variant	rs12302158
Chromosome Location	chr12:63127200-63127201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63124722..63127386-chr12:63133174..63134822,2	MCF-7	breast:
2	chr12:62995906..62997656-chr12:63124970..63127361,2	MCF-7	breast:
3	chr12:63125401..63128533-chr12:63129737..63133107,4	K562	blood:
4	chr12:63124068..63127843-chr12:63129952..63132671,4	MCF-7	breast:
5	chr12:63120474..63123125-chr12:63125500..63127400,2	MCF-7	breast:
6	chr12:63124937..63127215-chr12:63127798..63129812,2	MCF-7	breast:
7	chr12:63125401..63128193-chr12:63129973..63133107,3	K562	blood:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

rs_ID	r²[population]
rs10128947	1.00[AMR][1000 genomes]
rs11174622	1.00[AMR][1000 genomes]
rs11174624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11174625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11829074	1.00[AMR][1000 genomes]
rs11832962	1.00[AMR][1000 genomes]
rs12301931	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306385	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57366716	1.00[AMR][1000 genomes]
rs7295849	1.00[AMR][1000 genomes]
rs73312458	1.00[AMR][1000 genomes]
rs73316275	1.00[AMR][1000 genomes]
rs7965725	1.00[AMR][1000 genomes]
rs7978602	1.00[AMR][1000 genomes]

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63114000-63129400	Weak transcription	Liver	Liver
3	chr12:63120000-63131600	Weak transcription	Thymus	Thymus
4	chr12:63121800-63128200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:63121800-63133200	Strong transcription	HepG2	liver
6	chr12:63122200-63127600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:63122600-63127200	Enhancers	NH-A	brain
8	chr12:63123000-63152000	Weak transcription	Gastric	stomach
9	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr12:63123600-63131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:63123600-63131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:63123600-63132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:63124000-63127600	Flanking Active TSS	A549	lung
14	chr12:63124000-63127800	Enhancers	HUVEC	blood vessel
15	chr12:63124200-63131600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:63124200-63131800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr12:63124400-63127800	Enhancers	HMEC	breast
19	chr12:63124400-63131200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr12:63124400-63131600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:63124400-63131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:63124600-63127200	Enhancers	Duodenum Mucosa	Duodenum
23	chr12:63124600-63127400	Enhancers	NHEK	skin
24	chr12:63124600-63129400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:63124600-63132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr12:63124800-63127200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:63124800-63127200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:63125000-63127200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:63125000-63127200	Enhancers	Small Intestine	intestine
30	chr12:63125000-63127200	Enhancers	Stomach Mucosa	stomach
31	chr12:63125000-63127400	Enhancers	GM12878-XiMat	blood
32	chr12:63125200-63132400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:63125400-63127200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:63125400-63127200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr12:63125400-63127400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr12:63125400-63127800	Enhancers	HSMMtube	muscle
37	chr12:63125400-63132200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:63125600-63127400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:63125600-63127400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:63125600-63127600	Enhancers	Osteobl	bone
41	chr12:63125600-63127800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr12:63125600-63128600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:63125600-63128600	Enhancers	NHDF-Ad	bronchial
44	chr12:63125600-63138400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr12:63125800-63127400	Enhancers	NHLF	lung
46	chr12:63125800-63130000	Weak transcription	Fetal Brain Female	brain
47	chr12:63125800-63131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr12:63125800-63132200	Weak transcription	Brain Substantia Nigra	brain
49	chr12:63125800-63133600	Weak transcription	Fetal Kidney	kidney
50	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links