Variant report
| Variant | rs12302178 |
|---|---|
| Chromosome Location | chr12:10831308-10831309 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:10759767..10761586-chr12:10831071..10833569,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| STYK1 | TF binding region |
| ENSG00000111196 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10732559 | 1.00[AMR][1000 genomes] |
| rs10734835 | 1.00[AMR][1000 genomes] |
| rs10734836 | 1.00[AMR][1000 genomes] |
| rs10743902 | 1.00[AMR][1000 genomes] |
| rs10743906 | 1.00[AMR][1000 genomes] |
| rs10743907 | 1.00[AMR][1000 genomes] |
| rs10772308 | 1.00[AMR][1000 genomes] |
| rs11053840 | 1.00[AMR][1000 genomes] |
| rs11053844 | 1.00[AMR][1000 genomes] |
| rs11053845 | 1.00[AMR][1000 genomes] |
| rs11053921 | 1.00[EUR][1000 genomes] |
| rs11053922 | 1.00[EUR][1000 genomes] |
| rs11053929 | 1.00[EUR][1000 genomes] |
| rs12300797 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28470343 | 1.00[EUR][1000 genomes] |
| rs28858471 | 1.00[EUR][1000 genomes] |
| rs2900551 | 1.00[AMR][1000 genomes] |
| rs4258459 | 1.00[AMR][1000 genomes] |
| rs4316593 | 1.00[AMR][1000 genomes] |
| rs4348990 | 1.00[AMR][1000 genomes] |
| rs4360778 | 1.00[AMR][1000 genomes] |
| rs4503631 | 1.00[AMR][1000 genomes] |
| rs4763583 | 1.00[AMR][1000 genomes] |
| rs4763584 | 1.00[AMR][1000 genomes] |
| rs7136822 | 1.00[AMR][1000 genomes] |
| rs7301725 | 1.00[EUR][1000 genomes] |
| rs7314768 | 1.00[EUR][1000 genomes] |
| rs73265916 | 1.00[AMR][1000 genomes] |
| rs73267972 | 1.00[EUR][1000 genomes] |
| rs7960696 | 1.00[AMR][1000 genomes] |
| rs7976728 | 1.00[AMR][1000 genomes] |
| rs9668523 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832329 | chr12:10677094-10845946 | Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050613 | chr12:10809805-10844399 | Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:10830800-10833000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr12:10830800-10833200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
