Variant report

Variant	rs12302395
Chromosome Location	chr12:63127692-63127693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63125401..63128533-chr12:63129737..63133107,4	K562	blood:
2	chr12:63124068..63127843-chr12:63129952..63132671,4	MCF-7	breast:
3	chr12:63124938..63126859-chr12:63127392..63129677,2	K562	blood:
4	chr12:63125401..63128193-chr12:63129973..63133107,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10128947	1.00[AMR][1000 genomes]
rs11174622	1.00[AMR][1000 genomes]
rs11174624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11174625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11829074	1.00[AMR][1000 genomes]
rs11832962	1.00[AMR][1000 genomes]
rs12301931	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302279	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306385	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57366716	1.00[AMR][1000 genomes]
rs7295849	1.00[AMR][1000 genomes]
rs73312458	1.00[AMR][1000 genomes]
rs73316275	1.00[AMR][1000 genomes]
rs7965725	1.00[AMR][1000 genomes]
rs7978602	1.00[AMR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63114000-63129400	Weak transcription	Liver	Liver
3	chr12:63120000-63131600	Weak transcription	Thymus	Thymus
4	chr12:63121800-63128200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:63121800-63133200	Strong transcription	HepG2	liver
6	chr12:63123000-63152000	Weak transcription	Gastric	stomach
7	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr12:63123600-63131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:63123600-63131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:63123600-63132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:63124000-63127800	Enhancers	HUVEC	blood vessel
12	chr12:63124200-63131600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:63124200-63131800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr12:63124400-63127800	Enhancers	HMEC	breast
16	chr12:63124400-63131200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:63124400-63131600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr12:63124400-63131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:63124600-63129400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:63124600-63132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr12:63125200-63132400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr12:63125400-63127800	Enhancers	HSMMtube	muscle
23	chr12:63125400-63132200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:63125600-63127800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr12:63125600-63128600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:63125600-63128600	Enhancers	NHDF-Ad	bronchial
27	chr12:63125600-63138400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr12:63125800-63130000	Weak transcription	Fetal Brain Female	brain
29	chr12:63125800-63131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr12:63125800-63132200	Weak transcription	Brain Substantia Nigra	brain
31	chr12:63125800-63133600	Weak transcription	Fetal Kidney	kidney
32	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas
33	chr12:63126000-63129200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:63126000-63129400	Weak transcription	Fetal Intestine Large	intestine
35	chr12:63126000-63132000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr12:63126000-63132400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr12:63126000-63132800	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:63126000-63133000	Weak transcription	Brain Anterior Caudate	brain
39	chr12:63126000-63133000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:63126000-63133600	Weak transcription	Adipose Nuclei	Adipose
41	chr12:63126000-63138400	Weak transcription	Left Ventricle	heart
42	chr12:63126000-63149200	Weak transcription	Lung	lung
43	chr12:63126200-63129400	Weak transcription	Placenta	Placenta
44	chr12:63126200-63130200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr12:63126200-63131000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr12:63126200-63132400	Weak transcription	Ovary	ovary
47	chr12:63126200-63133000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr12:63126200-63133200	Weak transcription	Fetal Stomach	stomach
49	chr12:63126200-63133200	Weak transcription	Right Atrium	heart
50	chr12:63126200-63138600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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