Variant report
| Variant | rs12306070 |
|---|---|
| Chromosome Location | chr12:86846308-86846309 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:53)
| rs_ID | r2[population] |
|---|---|
| rs10047529 | 1.00[CHB][hapmap] |
| rs10047643 | 1.00[CHB][hapmap] |
| rs10160933 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10735253 | 1.00[CHB][hapmap] |
| rs10745428 | 1.00[CHB][hapmap] |
| rs10745429 | 1.00[CHB][hapmap] |
| rs10776954 | 1.00[JPT][hapmap] |
| rs10776982 | 1.00[CHB][hapmap] |
| rs10776985 | 1.00[CHB][hapmap] |
| rs11103901 | 1.00[YRI][hapmap] |
| rs11103902 | 1.00[YRI][hapmap] |
| rs11103910 | 1.00[YRI][hapmap] |
| rs11103922 | 0.87[YRI][hapmap] |
| rs11103937 | 1.00[YRI][hapmap] |
| rs11103956 | 1.00[YRI][hapmap] |
| rs11103959 | 0.88[YRI][hapmap] |
| rs11103986 | 0.88[YRI][hapmap] |
| rs11610166 | 1.00[CHB][hapmap] |
| rs11830847 | 1.00[CHB][hapmap] |
| rs11835122 | 1.00[CHB][hapmap] |
| rs11836942 | 1.00[CHB][hapmap] |
| rs11837474 | 1.00[CHB][hapmap] |
| rs12296316 | 0.88[YRI][hapmap] |
| rs12311647 | 1.00[YRI][hapmap] |
| rs12316480 | 1.00[YRI][hapmap] |
| rs12318366 | 1.00[YRI][hapmap] |
| rs12318998 | 1.00[YRI][hapmap] |
| rs12319070 | 0.88[YRI][hapmap] |
| rs12321594 | 1.00[YRI][hapmap] |
| rs1389294 | 1.00[JPT][hapmap] |
| rs1389295 | 1.00[JPT][hapmap] |
| rs17013976 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs2141925 | 1.00[JPT][hapmap] |
| rs2405797 | 1.00[JPT][hapmap] |
| rs2405934 | 1.00[JPT][hapmap] |
| rs2452803 | 1.00[JPT][hapmap] |
| rs2452805 | 1.00[JPT][hapmap] |
| rs2452806 | 1.00[JPT][hapmap] |
| rs4280066 | 1.00[CHB][hapmap] |
| rs4309212 | 1.00[CHB][hapmap] |
| rs4309213 | 1.00[CHB][hapmap] |
| rs4427624 | 1.00[CHB][hapmap] |
| rs4465426 | 1.00[CHB][hapmap] |
| rs4508266 | 1.00[CHB][hapmap] |
| rs5027506 | 1.00[CHB][hapmap] |
| rs6538047 | 1.00[CHB][hapmap] |
| rs6538048 | 1.00[CHB][hapmap] |
| rs7134045 | 1.00[JPT][hapmap] |
| rs7134480 | 1.00[CHB][hapmap] |
| rs7137308 | 1.00[JPT][hapmap] |
| rs9645772 | 1.00[CHB][hapmap] |
| rs9645781 | 1.00[CHB][hapmap] |
| rs9971936 | 0.87[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754127 | chr12:86723232-87576932 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv899395 | chr12:86813367-87177972 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
