Variant report

Variant	rs12306385
Chromosome Location	chr12:63124012-63124013
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62995620..62997745-chr12:63123956..63125796,2	MCF-7	breast:
2	chr12:63111920..63113731-chr12:63121555..63124475,2	K562	blood:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10128947	1.00[AMR][1000 genomes]
rs11174622	1.00[AMR][1000 genomes]
rs11174624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11174625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11829074	1.00[AMR][1000 genomes]
rs11832962	1.00[AMR][1000 genomes]
rs12301931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302158	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302279	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302290	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12302395	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57366716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7295849	1.00[AMR][1000 genomes]
rs73312458	1.00[AMR][1000 genomes]
rs73316275	1.00[AMR][1000 genomes]
rs7965725	1.00[AMR][1000 genomes]
rs7978602	1.00[AMR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63107200-63125000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:63114000-63129400	Weak transcription	Liver	Liver
4	chr12:63115000-63124600	Weak transcription	Aorta	Aorta
5	chr12:63115000-63125800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:63116600-63125000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:63117600-63124800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:63119200-63124600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr12:63119200-63124600	Weak transcription	Fetal Kidney	kidney
10	chr12:63119200-63124600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr12:63119600-63124800	Weak transcription	Primary B cells from cord blood	blood
12	chr12:63120000-63124600	Weak transcription	Hela-S3	cervix
13	chr12:63120000-63124800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:63120000-63131600	Weak transcription	Thymus	Thymus
15	chr12:63120600-63124600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:63120600-63124600	Weak transcription	NHEK	skin
17	chr12:63120600-63125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:63120600-63125400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:63121000-63124400	Weak transcription	HMEC	breast
20	chr12:63121000-63124600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:63121800-63124200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr12:63121800-63124200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr12:63121800-63124400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr12:63121800-63124600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr12:63121800-63125800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr12:63121800-63128200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:63121800-63133200	Strong transcription	HepG2	liver
28	chr12:63122000-63124200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr12:63122000-63124600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr12:63122000-63125000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:63122000-63125000	Enhancers	NHLF	lung
32	chr12:63122000-63125000	Enhancers	Osteobl	bone
33	chr12:63122000-63125200	Enhancers	Brain Cingulate Gyrus	brain
34	chr12:63122000-63125400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr12:63122200-63124200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr12:63122200-63124200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr12:63122200-63124400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr12:63122200-63125000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr12:63122200-63127600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr12:63122400-63124200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr12:63122400-63124200	Enhancers	Fetal Thymus	thymus
42	chr12:63122400-63124400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr12:63122400-63124800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr12:63122400-63125000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr12:63122400-63126000	Enhancers	Brain Anterior Caudate	brain
46	chr12:63122400-63126000	Enhancers	K562	blood
47	chr12:63122600-63124200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr12:63122600-63125000	Weak transcription	Placenta	Placenta
49	chr12:63122600-63127200	Enhancers	NH-A	brain
50	chr12:63122800-63124600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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