Variant report

Variant	rs12315418
Chromosome Location	chr12:63125131-63125132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63124722..63127386-chr12:63133174..63134822,2	MCF-7	breast:
2	chr12:62995906..62997656-chr12:63124970..63127361,2	MCF-7	breast:
3	chr12:63124068..63127843-chr12:63129952..63132671,4	MCF-7	breast:
4	chr12:62995620..62997745-chr12:63123956..63125796,2	MCF-7	breast:
5	chr12:63124937..63127215-chr12:63127798..63129812,2	MCF-7	breast:
6	chr12:63124938..63126859-chr12:63127392..63129677,2	K562	blood:

Variant related genes	Relation type
ENSG00000221949	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10877911	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11174621	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11174626	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7295577	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7308302	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7312352	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7954555	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7970056	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63114000-63129400	Weak transcription	Liver	Liver
3	chr12:63115000-63125800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:63120000-63131600	Weak transcription	Thymus	Thymus
5	chr12:63120600-63125400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:63121800-63125800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:63121800-63128200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:63121800-63133200	Strong transcription	HepG2	liver
9	chr12:63122000-63125200	Enhancers	Brain Cingulate Gyrus	brain
10	chr12:63122000-63125400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:63122200-63127600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr12:63122400-63126000	Enhancers	Brain Anterior Caudate	brain
13	chr12:63122400-63126000	Enhancers	K562	blood
14	chr12:63122600-63127200	Enhancers	NH-A	brain
15	chr12:63123000-63125200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:63123000-63125200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:63123000-63125200	Weak transcription	Psoas Muscle	Psoas
18	chr12:63123000-63126400	Enhancers	Fetal Muscle Leg	muscle
19	chr12:63123000-63152000	Weak transcription	Gastric	stomach
20	chr12:63123200-63125200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr12:63123200-63125200	Weak transcription	Esophagus	oesophagus
22	chr12:63123200-63125200	Weak transcription	Spleen	Spleen
23	chr12:63123200-63125400	Weak transcription	Brain Substantia Nigra	brain
24	chr12:63123200-63127000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr12:63123400-63125200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:63123400-63125200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr12:63123400-63126000	Weak transcription	Right Atrium	heart
29	chr12:63123600-63125200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr12:63123600-63125200	Weak transcription	Lung	lung
31	chr12:63123600-63127000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:63123600-63131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:63123600-63131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:63123600-63132400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr12:63123800-63125200	Enhancers	Colon Smooth Muscle	Colon
36	chr12:63124000-63127600	Flanking Active TSS	A549	lung
37	chr12:63124000-63127800	Enhancers	HUVEC	blood vessel
38	chr12:63124200-63125200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:63124200-63125600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:63124200-63126000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr12:63124200-63131600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr12:63124200-63131800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr12:63124400-63126200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr12:63124400-63127800	Enhancers	HMEC	breast
46	chr12:63124400-63131200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr12:63124400-63131600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr12:63124400-63131600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr12:63124600-63125400	Active TSS	Aorta	Aorta
50	chr12:63124600-63125600	Enhancers	Colonic Mucosa	Colon

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