Variant report

Variant	rs12319070
Chromosome Location	chr12:86830548-86830549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10160933	0.87[YRI][hapmap]
rs11103901	0.88[YRI][hapmap]
rs11103902	0.88[YRI][hapmap]
rs11103910	0.88[YRI][hapmap]
rs11103922	1.00[YRI][hapmap]
rs11103937	0.88[YRI][hapmap]
rs11103956	0.85[YRI][hapmap]
rs11103959	1.00[YRI][hapmap]
rs11103986	1.00[YRI][hapmap]
rs12296316	1.00[YRI][hapmap]
rs12299950	0.88[YRI][hapmap]
rs12306070	0.88[YRI][hapmap]
rs12308711	0.88[YRI][hapmap]
rs12311647	0.88[YRI][hapmap]
rs12314245	0.83[AFR][1000 genomes]
rs12316403	0.83[AFR][1000 genomes]
rs12316480	0.87[YRI][hapmap]
rs12317029	0.85[AFR][1000 genomes]
rs12318124	0.87[YRI][hapmap]
rs12318366	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs12318998	1.00[YRI][hapmap]
rs12321412	0.87[YRI][hapmap]
rs12321594	1.00[YRI][hapmap]
rs4842468	0.87[YRI][hapmap]
rs9971936	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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