Variant report

Variant	rs12321784
Chromosome Location	chr12:86563848-86563849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11103901	0.87[YRI][hapmap]
rs11103902	0.87[YRI][hapmap]
rs11103910	0.87[YRI][hapmap]
rs11103922	1.00[YRI][hapmap]
rs11103937	0.87[YRI][hapmap]
rs12296316	1.00[YRI][hapmap]
rs12299950	0.86[YRI][hapmap]
rs12304625	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs12305480	0.87[YRI][hapmap]
rs12306726	0.82[YRI][hapmap]
rs12308711	0.87[YRI][hapmap]
rs12311208	0.87[YRI][hapmap]
rs12311647	0.87[YRI][hapmap]
rs12316480	0.85[YRI][hapmap]
rs12318124	0.85[YRI][hapmap]
rs12318998	1.00[YRI][hapmap]
rs12321412	0.85[YRI][hapmap]
rs4842468	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86563400-86564400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:86563600-86564000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr12:86563600-86564200	Enhancers	Hela-S3	cervix
4	chr12:86563800-86564200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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