Variant report

Variant	rs12322217
Chromosome Location	chr12:10437357-10437358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10436832..10439225-chr12:10509141..10511407,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10743890	1.00[AMR][1000 genomes]
rs10845102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11610719	1.00[AMR][1000 genomes]
rs11830753	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12099689	1.00[AMR][1000 genomes]
rs1915326	1.00[AMR][1000 genomes]
rs2253722	1.00[AMR][1000 genomes]
rs2253849	1.00[AMR][1000 genomes]
rs2447701	1.00[AMR][1000 genomes]
rs2447702	1.00[AMR][1000 genomes]
rs2460730	1.00[AMR][1000 genomes]
rs2460731	1.00[AMR][1000 genomes]
rs2460732	1.00[AMR][1000 genomes]
rs2460733	1.00[AMR][1000 genomes]
rs2460735	1.00[AMR][1000 genomes]
rs2682495	1.00[AMR][1000 genomes]
rs2682496	1.00[AMR][1000 genomes]
rs2682497	1.00[AMR][1000 genomes]
rs2682498	1.00[AMR][1000 genomes]
rs2682499	1.00[AMR][1000 genomes]
rs2682500	1.00[AMR][1000 genomes]
rs2682502	1.00[AMR][1000 genomes]
rs2682503	1.00[AMR][1000 genomes]
rs2682505	1.00[AMR][1000 genomes]
rs2682506	1.00[AMR][1000 genomes]
rs2682507	1.00[AMR][1000 genomes]
rs2682510	1.00[AMR][1000 genomes]
rs2734434	1.00[AMR][1000 genomes]
rs2741881	1.00[AMR][1000 genomes]
rs2741885	1.00[AMR][1000 genomes]
rs2741886	1.00[AMR][1000 genomes]
rs2741887	1.00[AMR][1000 genomes]
rs2741888	1.00[AMR][1000 genomes]
rs28425178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2981589	1.00[AMR][1000 genomes]
rs2981590	1.00[AMR][1000 genomes]
rs4275705	1.00[AMR][1000 genomes]
rs4394921	1.00[AMR][1000 genomes]
rs4579992	1.00[AMR][1000 genomes]
rs4612903	1.00[AMR][1000 genomes]
rs57872510	1.00[AMR][1000 genomes]
rs58350988	1.00[AMR][1000 genomes]
rs9668214	1.00[AMR][1000 genomes]
rs9804977	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv557454	chr12:10417260-10440885	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10429000-10442000	Weak transcription	Left Ventricle	heart
2	chr12:10436000-10438200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:10436400-10441600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:10437200-10437800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links