Variant report

Variant	rs12324142
Chromosome Location	chr15:76414889-76414890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1391470	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1518964	1.00[CEU][hapmap]
rs16967934	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2454472	1.00[CEU][hapmap]
rs2469563	0.82[EUR][1000 genomes]
rs28435523	0.92[EUR][1000 genomes]
rs28713704	1.00[EUR][1000 genomes]
rs2935980	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2955725	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2955729	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2955730	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2955738	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs57906605	0.92[EUR][1000 genomes]
rs58215773	0.92[EUR][1000 genomes]
rs58863068	0.92[EUR][1000 genomes]
rs7163654	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7173697	1.00[CEU][hapmap]
rs7174365	1.00[CEU][hapmap]
rs74024085	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024095	0.92[EUR][1000 genomes]
rs74024096	0.92[EUR][1000 genomes]
rs74024098	0.92[EUR][1000 genomes]
rs74024101	0.92[EUR][1000 genomes]
rs74024102	0.92[EUR][1000 genomes]
rs8030469	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76414400-76416600	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links